alimuldal / PyFNND
A Python implementation of fast non-negative deconvolution
☆23Updated 5 years ago
Alternatives and similar repositories for PyFNND:
Users that are interested in PyFNND are comparing it to the libraries listed below
- Hidden Markov Models (HMMs) with tied states and autoregressive observations☆23Updated 4 years ago
- Automatic ROI Detection☆19Updated 9 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Updated 6 years ago
- Matlab package implementing blind deconvolution method for neural spike recovery☆14Updated 8 years ago
- Exact Spike Inference Via L0 Optimization☆8Updated 6 years ago
- Basic integration for Slack notifications for Matlab.☆21Updated 10 years ago
- Generalized linear models for neural spike train modeling, in Python! With GPU-accelerated fully-Bayesian inference, MAP inference, and n…☆44Updated 10 years ago
- Python implementation of fast-oopsi, smc-oopsi, wiener, and discretize with binning☆14Updated 2 years ago
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Updated 8 years ago
- 3-D imaging visualisation through slicing☆29Updated 3 months ago
- Fast Exact Spike Inference Via L0 Optimization☆15Updated 4 years ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 4 years ago
- Trend Filter Denoising☆21Updated 3 years ago
- The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…☆20Updated 8 years ago
- SpikeForest -- spike sorting analysis for website☆16Updated 4 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆39Updated 3 weeks ago
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Updated 3 years ago
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10Updated 2 years ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Updated 8 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 3 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 6 years ago
- ☆9Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆30Updated 2 weeks ago
- This repository contains code used for the fly brain activity experiments☆18Updated last year
- A workshop for teaching python to neuroscientists with some previous programming experience.☆34Updated 9 years ago
- Library for producing and processing on the Adaptive Particle Representation (APR).☆48Updated 3 weeks ago
- A modular package to control stimulation and track behaviour☆44Updated 5 months ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Updated 3 years ago
- Some python functions to supplement the NEURON python module☆29Updated 5 years ago