Deep-learning based pipeline for analysis of whole-brain light sheet microscopy images
☆11Sep 13, 2024Updated 2 years ago
Alternatives and similar repositories for DeepTraCE
Users that are interested in DeepTraCE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆40Mar 4, 2024Updated 2 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- ☆47Jun 18, 2026Updated 4 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- BIRDS plug-in on Fiji and attached jar package☆23Oct 7, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a place to work on a specification for skeletons☆23Sep 14, 2026Updated last month
- ☆11Oct 19, 2023Updated 3 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- A tool for translating between common coordinate frameworks using deformation matrices.☆15Oct 15, 2026Updated last week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆82Aug 12, 2026Updated 2 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Jul 4, 2022Updated 4 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- Build unbiased anatomical templates from individual images☆14Oct 13, 2026Updated last week
- Manage annotation data for your animal behaviour analysis☆30Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pixel-realignment based self-supervised reconstruction for structured illumination microscopy☆11Jan 15, 2024Updated 2 years ago
- Helps plan where to put things in brains☆10Nov 1, 2023Updated 2 years ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆62Sep 29, 2026Updated 3 weeks ago
- ☆20Apr 6, 2022Updated 4 years ago
- Brain flatmaps generation☆13Oct 5, 2022Updated 4 years ago
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆14Updated this week
- A gui for browsing joint calcium imaging + behavioral data.☆57Jan 22, 2025Updated last year
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 3 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆33Oct 13, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Image processing tool focusing on biological applications☆14Jul 18, 2025Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆15Oct 13, 2026Updated last week
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆21Nov 18, 2025Updated 11 months ago
- Anatomical space conventions made easy.☆12Oct 13, 2026Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆27May 22, 2022Updated 4 years ago
- A flexible Python-based GUI for stereotaxic experiment planning.☆13Aug 19, 2026Updated 2 months ago
- Hardware documentation for mesoSPIM-Bechtop microscope project☆33May 11, 2026Updated 5 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆134Sep 8, 2026Updated last month
- Automated 3D cell detection in very large images☆231Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Standalone cellfinder cell detection algorithm☆19Jan 3, 2024Updated 2 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Jun 18, 2020Updated 6 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Oct 13, 2026Updated last week
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆23Mar 30, 2026Updated 6 months ago
- A mouse brain histology tool for neuroscientists.☆13Feb 16, 2026Updated 8 months ago
- ☆224Jun 3, 2024Updated 2 years ago