YijunBao / Shallow-UNet-Neuron-Segmentation_SUNSLinks
☆17Updated 2 years ago
Alternatives and similar repositories for Shallow-UNet-Neuron-Segmentation_SUNS
Users that are interested in Shallow-UNet-Neuron-Segmentation_SUNS are comparing it to the libraries listed below
Sorting:
- motion correction☆17Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated this week
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- ☆41Updated 4 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆56Updated 2 years ago
- A curated list of awesome Janelia software☆17Updated 10 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Fast, volumetric cell detection. In development.☆21Updated last week
- Control and design of two-photon photostimulation experiments☆17Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Single photon tools for Neuroscience☆36Updated 2 months ago
- Brainways☆22Updated 4 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 4 months ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆33Updated last month
- Pre-processing pipeline for widefield data