YijunBao / Shallow-UNet-Neuron-Segmentation_SUNSLinks
☆17Updated 2 years ago
Alternatives and similar repositories for Shallow-UNet-Neuron-Segmentation_SUNS
Users that are interested in Shallow-UNet-Neuron-Segmentation_SUNS are comparing it to the libraries listed below
Sorting:
- motion correction☆17Updated 2 years ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated 2 years ago
- ☆40Updated 3 years ago
- Serial-section automated anatomy extension for ScanImage☆15Updated last month
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆95Updated 10 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- Fast, volumetric cell detection. In development.☆18Updated 3 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- A curated list of awesome Janelia software☆17Updated 6 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Control and design of two-photon photostimulation experiments☆17Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆77Updated 9 months ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- Single photon tools for Neuroscience☆35Updated last year
- Brainways☆21Updated 3 weeks ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- pipeline for volumetric cell segmentation☆13Updated 2 weeks ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 3 weeks ago
- https://nutil.readthedocs.io/en/latest/☆13Updated 2 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated 2 weeks ago
- Flow-Registration toolbox for 2P motion compensation☆25Updated this week
- ☆18Updated 3 years ago