☆17May 26, 2023Updated 3 years ago
Alternatives and similar repositories for Shallow-UNet-Neuron-Segmentation_SUNS
Users that are interested in Shallow-UNet-Neuron-Segmentation_SUNS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12May 28, 2026Updated 3 weeks ago
- A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)☆18Jul 16, 2019Updated 6 years ago
- ☆42Sep 29, 2021Updated 4 years ago
- benchmarking challenge for finding neurons in imaging data☆76Apr 10, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Nov 28, 2016Updated 9 years ago
- Visual Coding 2P analysis code☆18Jun 3, 2020Updated 6 years ago
- Analysis code for the OpenScope Credit Assignment project.☆13Jul 9, 2024Updated last year
- ☆11Apr 4, 2021Updated 5 years ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 2 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 3 months ago
- Registration of cells across sessions.☆79Aug 20, 2024Updated last year
- Deconvolution of calcium imaging data☆107Jun 4, 2026Updated 2 weeks ago
- ☆11Oct 19, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Compression, denoising and demixing of functional imaging recordings☆29Jul 11, 2018Updated 7 years ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.☆11Mar 31, 2022Updated 4 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- WIP exporter to bring WorkFlowy outline into Logseq☆10Oct 23, 2021Updated 4 years ago
- CellTracker: An Automated Toolbox for Single-Cell Segmentation and Tracking in Microscopy Images☆20Dec 2, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆195Jan 26, 2026Updated 4 months ago
- This repository contains various Autoencoders implemented using TensorFlow☆12Dec 3, 2018Updated 7 years ago
- Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.☆17Apr 9, 2025Updated last year
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- CLIJ is deprecated. Visit CLIJ2☆57Jun 12, 2021Updated 5 years ago
- Pre-processing pipeline for widefield data☆13Dec 11, 2020Updated 5 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- A GLM based approach to measure CFC☆16Oct 4, 2019Updated 6 years ago
- Adaptive Platform for Neuroscience Experiments☆44Nov 18, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MATLAB colormaps for scientific data visualization☆15Apr 2, 2026Updated 2 months ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆723Apr 16, 2026Updated 2 months ago
- Public release of Monoqlo Python code☆10Apr 19, 2022Updated 4 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Jun 18, 2024Updated 2 years ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- Calculator for generating gamma brightness lookup tables for driving leds☆15Nov 24, 2019Updated 6 years ago
- ☆12May 21, 2025Updated last year