immunogenomics / IMPACTLinks
Code for creating cell-type-specific regulatory element annotation files
☆18Updated last year
Alternatives and similar repositories for IMPACT
Users that are interested in IMPACT are comparing it to the libraries listed below
Sorting:
- Pairwise Hierarchical Model☆20Updated 3 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- ☆13Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- scover☆24Updated 2 years ago
- Mediated Expression Score Regression (MESC)☆26Updated last week
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- An R package to interpret biological trends from DNA methylation data☆18Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆12Updated 3 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- ☆20Updated 3 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Updated last year
- Decomposition of heterogeneous DNA methylomes☆23Updated last year
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Exon-Intron Split Analysis (EISA) in R☆17Updated last week
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- GWAS gold standards repository☆39Updated last year
- software package for integrative genetic association analysis☆35Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 10 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago