immunogenomics / IMPACTLinks
Code for creating cell-type-specific regulatory element annotation files
☆18Updated last year
Alternatives and similar repositories for IMPACT
Users that are interested in IMPACT are comparing it to the libraries listed below
Sorting:
- Pairwise Hierarchical Model☆19Updated 3 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- ☆13Updated 2 years ago
- Code for implementing Mendelian randomization investigations☆18Updated 9 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- ☆20Updated last week
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated last year
- GWAS gold standards repository☆37Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- software package for integrative genetic association analysis☆34Updated 2 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- ☆23Updated 3 years ago
- scover☆23Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated last year
- causal TWAS (cTWAS)☆44Updated last month
- Scripts used for generating Neale Lab UKB results☆20Updated 2 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated 2 weeks ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- ☆33Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year