Methods for summarizing and visualizing multi-biosample functional genomic annotations
☆47Mar 26, 2025Updated 11 months ago
Alternatives and similar repositories for epilogos
Users that are interested in epilogos are comparing it to the libraries listed below
Sorting:
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- ☆13Sep 4, 2025Updated 6 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- R interface to 'Gos'☆38Feb 23, 2023Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- Software for creating and comparing genome fingerprints.☆11Jun 30, 2024Updated last year
- Server component for HiGlass that manages and serves tiled data☆21May 23, 2023Updated 2 years ago
- A visual exploration and hypothesis testing tool for 3D genomics☆13Apr 12, 2024Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 4 months ago
- Code for creating cell-type-specific regulatory element annotation files☆19Jun 11, 2024Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆240Dec 2, 2025Updated 3 months ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated last year
- convert from HDF5 matrix format to txt/tab (tsv) matrix format☆10Aug 3, 2016Updated 9 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- ☆14May 26, 2020Updated 5 years ago
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 4 years ago
- ☆15Jun 3, 2025Updated 9 months ago
- genomics toolbox that supports both graphical and command-line execution☆15Updated this week
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Detecting sites of genomic enrichment☆199May 8, 2023Updated 2 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆125Feb 3, 2026Updated last month
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- ☆14May 12, 2023Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆19Sep 25, 2019Updated 6 years ago