meuleman / epilogosLinks
Methods for summarizing and visualizing multi-biosample functional genomic annotations
☆46Updated 9 months ago
Alternatives and similar repositories for epilogos
Users that are interested in epilogos are comparing it to the libraries listed below
Sorting:
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆18Updated 2 weeks ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- Red-C data processing☆15Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 9 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- ☆23Updated 10 months ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year