call copy number from WES(WXS)
☆11May 10, 2021Updated 5 years ago
Alternatives and similar repositories for cnvkit_pipeline
Users that are interested in cnvkit_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Dec 29, 2025Updated 6 months ago
- MutSig2CV from Lawrence et al. 2014☆33Aug 18, 2020Updated 5 years ago
- ☆19Jun 23, 2020Updated 6 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- PaperBanana: Automating Academic Illustration For AI Scientists☆16Feb 2, 2026Updated 5 months ago
- A set of tools to annotate VCF files with expression and readcount data☆31Updated this week
- ☆29Sep 23, 2019Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 10 months ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Older repo for MRLocus. See new website for software usage guide:☆15Aug 17, 2023Updated 2 years ago
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 weeks ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆32Apr 19, 2018Updated 8 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆214Mar 20, 2024Updated 2 years ago
- Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.☆19Updated this week
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆13Apr 3, 2025Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- Analysing Capture Seq Count Data☆13Jun 11, 2018Updated 8 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆75Jul 17, 2026Updated last week
- ☆13Aug 6, 2025Updated 11 months ago
- ☆11May 21, 2024Updated 2 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆37May 23, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Jul 13, 2022Updated 4 years ago
- ☆33May 2, 2022Updated 4 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated 8 months ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" …☆10Oct 17, 2024Updated last year
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated last month