MedicalGenomicsLab / deconvolution_benchmarkingLinks
☆21Updated last year
Alternatives and similar repositories for deconvolution_benchmarking
Users that are interested in deconvolution_benchmarking are comparing it to the libraries listed below
Sorting:
- ☆11Updated 10 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 weeks ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆13Updated 2 years ago
- Reproducibility notebooks for scPoli☆19Updated 2 years ago
- ☆58Updated last year
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆29Updated 2 months ago
- Code used to process the data of the HBCA project☆31Updated last year
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Updated 7 months ago
- ☆19Updated 4 months ago
- cTPnet Package☆25Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 5 months ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆23Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Materials and scripts for building cell type encyclopedia table☆20Updated 7 months ago
- ☆56Updated last year
- ☆37Updated 2 years ago
- ☆17Updated 11 months ago
- ☆37Updated 2 months ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆38Updated 8 months ago
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆53Updated 11 months ago
- ☆54Updated 10 months ago
- ☆13Updated 2 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated 3 months ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆21Updated 2 months ago