MedicalGenomicsLab / deconvolution_benchmarking
☆20Updated last year
Alternatives and similar repositories for deconvolution_benchmarking
Users that are interested in deconvolution_benchmarking are comparing it to the libraries listed below
Sorting:
- Single-Cell Inference of Class Switch Recombination☆19Updated last month
- ☆10Updated 7 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Computational pipeline to process EasySci-RNA data.☆18Updated last year
- ☆16Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 3 years ago
- ☆16Updated 2 years ago
- ☆16Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- ☆9Updated 10 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- ☆17Updated 8 months ago
- Scripts from the GBM cellular states paper☆18Updated 4 years ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated 11 months ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- a simple R data package for curated cancer pathway-specific gene lists☆10Updated 5 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆13Updated 5 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆21Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago