Alternatives and similar repositories for deconvolution_benchmarking

Users that are interested in deconvolution_benchmarking are comparing it to the libraries listed below

• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆20Updated last year
• lydiaMyr / ImmuCellAI-mouse
  ☆10Updated last week
• broadinstitute / celligner
  tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.
  ☆11Updated last year
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated 10 months ago
• olapuentesantana / easier_manuscript
  ☆15Updated 3 years ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated 2 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• satijalab / Mixscale
  ☆18Updated last month
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆17Updated 2 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 4 months ago
• lanagarmire / Asgard
  ☆42Updated last year
• CSB5 / CaDRReS-Sc
  CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
  ☆17Updated 3 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 7 months ago
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆20Updated 11 months ago
• gmstanle / coronary-progenitor-scRNAseq
  ☆13Updated 6 years ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• xushiabbvie / TDtool
  ☆10Updated 7 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆21Updated 3 weeks ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago
• CNRGH / crimmix
  ☆17Updated 5 years ago
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆12Updated 3 weeks ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆34Updated last year
• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• liulab-dfci / lisa2
  ☆30Updated 2 years ago