☆22Apr 16, 2024Updated 2 years ago
Alternatives and similar repositories for deconvolution_benchmarking
Users that are interested in deconvolution_benchmarking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated 2 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆15Jul 29, 2025Updated last year
- ☆17Sep 16, 2024Updated 2 years ago
- ☆13Oct 9, 2025Updated last year
- Ecotypes of Triple-Negative Breast Cancer in Response to Chemotherapy☆18Oct 12, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- GLASS consortium☆14May 31, 2022Updated 4 years ago
- Repository for Immune Atlas Research Consortium at MMRF for storing research project code☆13Oct 3, 2025Updated last year
- ☆16Sep 13, 2024Updated 2 years ago
- ☆12Nov 23, 2023Updated 2 years ago
- ☆33Feb 26, 2025Updated last year
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 10 months ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- R package to analyze single cell DNA sequencing data.☆12Oct 14, 2026Updated 2 weeks ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆13Oct 8, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆63Sep 17, 2024Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆61Jan 15, 2024Updated 2 years ago
- Notebooks for reproducing figures in the Spectra paper☆13Jun 7, 2023Updated 3 years ago
- cTPnet Package☆28Jul 12, 2022Updated 4 years ago
- ☆13Jan 8, 2026Updated 9 months ago
- Codes for the scPLC project☆73Dec 2, 2022Updated 3 years ago
- ☆18Sep 1, 2023Updated 3 years ago
- ☆26Jan 9, 2024Updated 2 years ago
- ☆36Jul 21, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆15May 27, 2025Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Jul 27, 2023Updated 3 years ago
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 7 years ago
- ☆26Aug 27, 2026Updated 2 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13May 13, 2026Updated 5 months ago
- ☆14Jul 16, 2024Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- ☆13Jul 26, 2026Updated 3 months ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simple scVI implementation☆13Oct 19, 2026Updated last week
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- ☆11Jul 6, 2021Updated 5 years ago
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆62Apr 3, 2024Updated 2 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆74Oct 7, 2026Updated 3 weeks ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago