Alternatives and similar repositories for deconvolution_benchmarking

Users that are interested in deconvolution_benchmarking are comparing it to the libraries listed below

• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆45Updated 5 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆62Updated 2 years ago
• marrlab / CAR_T_TargetIdentification
  Computational identification of targets for CAR-T cell therapy in AML
  ☆21Updated 3 years ago
• xushiabbvie / TDtool
  ☆13Updated 3 weeks ago
• lanagarmire / Single-cell-drug-repositioning
  ☆17Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 11 months ago
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated last year
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆20Updated 4 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆24Updated 4 months ago
• broadinstitute / celligner
  tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.
  ☆11Updated 2 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆22Updated 2 years ago
• olapuentesantana / easier
  R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
  ☆15Updated 2 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆20Updated 2 months ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆29Updated 3 years ago
• shahcompbio / spectrum-tme
  Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"
  ☆24Updated 8 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆30Updated 3 years ago
• olapuentesantana / easier_manuscript
  ☆16Updated 4 years ago
• immunogenomics / TiRP
  code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…
  ☆13Updated last year
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆34Updated 9 months ago
• theislab / neural_organoid_atlas
  Reproducibility repository for the Human Neural Organoid Atlas publication
  ☆43Updated last year
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆38Updated 3 years ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆20Updated this week
• multitalk / miRTalk
  Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
  ☆17Updated 9 months ago
• jshilts / shilts-et-al-2022-immunoreceptors
  Supporting data files and code for the publication by Shilts et al.
  ☆31Updated 3 years ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated 2 years ago