JH-Zhou / HandyCNVView external linksLinks
An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH
☆15Oct 17, 2021Updated 4 years ago
Alternatives and similar repositories for HandyCNV
Users that are interested in HandyCNV are comparing it to the libraries listed below
Sorting:
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Postprocessing gadgets for output generated by RevBayes☆14Feb 6, 2026Updated last week
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- Web application for clinical pharmacogenomic interpretation☆10Mar 3, 2017Updated 8 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 7 months ago
- Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improv…☆13Dec 2, 2024Updated last year
- Shiny app for geno-pheno catalog☆11Nov 4, 2022Updated 3 years ago
- CNV detection tool for WES data☆12Aug 21, 2024Updated last year
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- ☆14Oct 29, 2021Updated 4 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 weeks ago
- NiPTUNE. A Python library for NIPT analyses.☆12Nov 22, 2021Updated 4 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Jan 22, 2026Updated 3 weeks ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 4 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated last year
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- ☆15Apr 10, 2024Updated last year
- ☆16Oct 17, 2024Updated last year
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆15Apr 5, 2019Updated 6 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆40Sep 8, 2025Updated 5 months ago
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆68May 26, 2025Updated 8 months ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 3 years ago
- 💊🧬 PharMe - Pharmaceutical insights tailored to your personal genome☆23Aug 20, 2025Updated 5 months ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- ☆16Jan 5, 2018Updated 8 years ago
- An automatic classification tool for PVS1 interpretation of null variants☆43Mar 4, 2024Updated last year
- R package for large-scale CNV analysis from RNA-seq☆19Dec 21, 2023Updated 2 years ago
- ☆17Mar 6, 2024Updated last year
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- ☆49Sep 4, 2025Updated 5 months ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆77Feb 28, 2023Updated 2 years ago