JH-Zhou / HandyCNVLinks
An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH
☆15Updated 4 years ago
Alternatives and similar repositories for HandyCNV
Users that are interested in HandyCNV are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 7 months ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆15Updated last year
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- ☆10Updated 2 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Updated 8 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- ☆17Updated last year
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- mitochondrial variant analysis tools☆15Updated 4 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Updated 6 years ago
- Enabling differential allele-specific analysis☆11Updated 9 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 7 years ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- Long read to rMATS☆32Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- ☆23Updated last month
- ☆14Updated 2 years ago
- ☆21Updated last year
- Repository for pipeline code☆26Updated last year
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- A series of scripts to automate sequence workflows☆19Updated 4 months ago