JH-Zhou / HandyCNVLinks
An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH
☆15Updated 3 years ago
Alternatives and similar repositories for HandyCNV
Users that are interested in HandyCNV are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- ☆15Updated last year
- mitochondrial variant analysis tools☆15Updated 4 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 9 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆14Updated this week
- ☆23Updated last week
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- ☆10Updated 2 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Filter and prioritize fusion calls☆20Updated 11 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 6 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 7 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 5 months ago
- ☆21Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Updated 8 years ago
- Telomerecat: The telomere computational analysis tool☆21Updated 4 years ago
- ☆18Updated 4 years ago
- Enabling differential allele-specific analysis☆11Updated 8 months ago
- Tools for merging Tandem Repeat VCF files☆33Updated 4 months ago
- ☆22Updated last month
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 7 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- Preprocessing sequencing data for allele-specific analysis☆12Updated 6 months ago
- ☆23Updated 9 months ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Updated 6 years ago