msesia / knockoffzoom
A flexible tool for the multi-resolution localization of causal variants across the genome
☆11Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for knockoffzoom
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 5 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Updated 3 years ago
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- Data and code for the Effector index☆13Updated 4 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated last year
- ☆19Updated 3 weeks ago
- K-mer counting algorithms and count-data utilities for the BioJulia framework☆11Updated last year
- GridLMM package☆39Updated last year
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Updated last week
- A matrix-like wrapper around PLINK .bed files☆18Updated 2 months ago
- ☆30Updated 2 years ago
- R wrapper for a Java Bayesian GLM variable selection package☆15Updated 4 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- LEMMA (Linear Environment Mixed Model Analysis) aims to uncover GxE interactions between SNPs and a linear combination of multiple enviro…☆12Updated last year
- A Suite of Packages for Analysis of Big Genomic Data☆34Updated last year
- Software for linkage disequilibrium graphical models☆15Updated 8 months ago
- ☆17Updated 3 years ago
- OpenMendel package for haplotyping and imputation☆24Updated this week
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- snpnet: Fast and scalable lasso/elastic-net solver for large SNP data☆32Updated 5 months ago
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆19Updated 8 months ago
- Toy simulations and analyses of heritability and genetic differences☆10Updated 4 months ago
- Quantitative Trait Cluster Association Test in R☆25Updated 3 years ago
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆21Updated this week
- Fast algorithms for GLM-PCA.☆11Updated 3 months ago
- Julia module to handle PLINK BED files☆11Updated 6 years ago
- Read and write VCF and BCF files☆13Updated 7 months ago
- Effective Computing—Resources for Computational Biologists☆24Updated 4 years ago