msesia / knockoffzoomLinks
A flexible tool for the multi-resolution localization of causal variants across the genome
☆11Updated 4 years ago
Alternatives and similar repositories for knockoffzoom
Users that are interested in knockoffzoom are comparing it to the libraries listed below
Sorting:
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 6 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Software for linkage disequilibrium graphical models☆16Updated 2 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 8 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- Data and code for the Effector index☆13Updated 4 years ago
- A unified framework to estimate genetic effects on the variance of quantitative traits☆12Updated 2 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated 2 years ago
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 4 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Updated 4 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 3 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Quantitative Trait Cluster Association Test in R☆25Updated 4 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- ☆18Updated 3 years ago
- A Suite of Packages for Analysis of Big Genomic Data☆34Updated 5 months ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- stageR package☆13Updated 2 years ago
- R wrapper for a Java Bayesian GLM variable selection package☆17Updated 5 years ago
- Repo for Dynamic Statistical Comparisons project☆12Updated last year
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Updated 7 months ago
- snpnet: Fast and scalable lasso/elastic-net solver for large SNP data☆32Updated last year