Annefeng / PBK-QC-pipeline
Partners Biobank genomics data QC
☆26Updated 5 years ago
Alternatives and similar repositories for PBK-QC-pipeline:
Users that are interested in PBK-QC-pipeline are comparing it to the libraries listed below
- Analyses conducting GWAS across the UKBB diverse superpopulations☆50Updated 7 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- ☆19Updated last year
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆31Updated last year
- Regional association plots☆25Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆24Updated this week
- ☆35Updated 4 years ago
- GWAS Summary Statistics Data Harmonisation☆22Updated 3 months ago
- Colocalization analysis of genetic association signals☆52Updated 5 months ago
- A powerful TWAS framework leveraging summary-level reference data☆29Updated last month
- R script to make Manhattan-style plot for TWAS☆37Updated 3 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆19Updated 2 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆33Updated 3 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆52Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- ☆32Updated last year
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆48Updated 4 years ago
- A collection of various utilities for GWAS summary statistics☆27Updated 11 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆59Updated 6 months ago
- Software for estimating correlation of trait effect sizes across populations☆46Updated 3 weeks ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Updated 7 months ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆31Updated last year
- ☆56Updated 3 months ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆34Updated 2 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆32Updated 2 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- Scripts to run mQTL analyses as described in the ARIES mQTL paper☆9Updated 9 years ago
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆35Updated last year