Annefeng / PBK-QC-pipelineLinks
Partners Biobank genomics data QC
☆30Updated 5 years ago
Alternatives and similar repositories for PBK-QC-pipeline
Users that are interested in PBK-QC-pipeline are comparing it to the libraries listed below
Sorting:
- Analyses conducting GWAS across the UKBB diverse superpopulations☆55Updated 4 months ago
- Software for estimating correlation of trait effect sizes across populations☆49Updated 4 months ago
- corrplot of LDSC genetic correlation results☆55Updated 3 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆33Updated 3 months ago
- ☆37Updated 4 years ago
- Causal Mixture Model for GWAS summary statistics☆86Updated this week
- ☆57Updated 8 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆85Updated 3 years ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆115Updated 2 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆35Updated 2 weeks ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆56Updated 4 years ago
- High-definition likelihood inference of genetic correlations (HDL)☆123Updated 3 months ago
- ☆19Updated 2 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆30Updated last week
- R package for CAUSE☆56Updated last year
- R script to make Manhattan-style plot for TWAS☆40Updated 4 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆72Updated 4 years ago
- methods for functional summary-based imputation☆88Updated 3 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆19Updated 3 years ago
- Source code of FUMA GWAS web application☆58Updated last year
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆68Updated 11 months ago
- ☆35Updated 2 years ago
- ☆76Updated 3 weeks ago
- Pariwise analysis of GWAS☆44Updated 7 years ago
- GWAS Summary Statistics Data Harmonisation☆23Updated 3 weeks ago
- Hypothesis Prioritisation in multi-trait Colocalization☆54Updated last year
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated last year