Alternatives and similar repositories for PBK-QC-pipeline:

Users that are interested in PBK-QC-pipeline are comparing it to the libraries listed below

• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆48Updated 4 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆30Updated last year
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆18Updated 2 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• cuelee / pleio
  ☆18Updated 11 months ago
• clagiamba / moloc
  ☆34Updated 4 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆47Updated 4 years ago
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆22Updated last month
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 2 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 10 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆33Updated 2 years ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆51Updated 10 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆55Updated 4 months ago
• eleporcu / TWMR
  ☆23Updated 5 years ago
• qlu-lab / SUPERGNOVA
  ☆25Updated 3 years ago
• MRCIEU / ariesmqtl
  Scripts to run mQTL analyses as described in the ARIES mQTL paper
  ☆9Updated 8 years ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆33Updated 4 months ago
• jean997 / cause
  R package for CAUSE
  ☆54Updated last year
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆28Updated 8 months ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆18Updated last year
• weizhou0 / GATE
  ☆22Updated last year
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆24Updated 4 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆78Updated 2 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆37Updated 3 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆26Updated 9 months ago
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆26Updated last year