Alternatives and similar repositories for MMQTL:

Users that are interested in MMQTL are comparing it to the libraries listed below

• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆62Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆22Updated 3 months ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆26Updated 3 years ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆28Updated 3 months ago
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• stormlovetao / eQTLQC
  ☆25Updated 4 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆32Updated 2 years ago
• weng-lab / ENCODE-cCREs
  Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
  ☆21Updated 2 months ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆19Updated last year
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆33Updated 2 months ago
• kundajelab / ataqc
  ☆16Updated 6 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 3 months ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆39Updated 3 years ago
• single-cell-genetics / limix_qtl
  ☆20Updated 8 months ago
• pdiakumis / rock
  Rocking R at UMCCR
  ☆9Updated 4 years ago
• jianyangqt / osca
  ☆19Updated last year
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• weizhou0 / qtl
  ☆25Updated last week
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆43Updated last year
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆36Updated 7 months ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆51Updated last year
• WansonChoi / CookHLA
  An accurate and efficient HLA imputation method.
  ☆26Updated last year
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆14Updated this week
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆15Updated 3 years ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆46Updated last week
• ArkingLab / MitoHPC
  ☆21Updated 11 months ago