Alternatives and similar repositories for sushie

Users that are interested in sushie are comparing it to the libraries listed below

• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 weeks ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆47Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 5 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 2 years ago
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆16Updated 3 years ago
• jinghuazhao / FM-pipeline
  A Fine-Mapping pipeline
  ☆21Updated 6 years ago
• yanglab-emory / TIGAR
  ☆22Updated 2 months ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆31Updated last year
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated last year
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated this week
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆51Updated 8 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆19Updated 10 years ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆26Updated 4 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆14Updated 2 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆39Updated 11 months ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 3 months ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week
• lcrawlab / i-LDSC
  Code and simulations using interaction-LD score regression
  ☆13Updated last year
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆19Updated 4 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆34Updated 5 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆18Updated 8 months ago
• mikelove / mrlocus
  Older repo for MRLocus. See new website for software usage guide:
  ☆15Updated 2 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated 3 months ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 3 years ago
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year