Alternatives and similar repositories for sushie

Users that are interested in sushie are comparing it to the libraries listed below

• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated last year
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆52Updated last month
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆29Updated 9 months ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆24Updated 3 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆46Updated 5 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 7 years ago
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆15Updated 3 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆44Updated last month
• lcrawlab / i-LDSC
  Code and simulations using interaction-LD score regression
  ☆13Updated last year
• yanglab-emory / TIGAR
  ☆21Updated 4 months ago
• jinghuazhao / FM-pipeline
  A Fine-Mapping pipeline
  ☆21Updated 5 years ago
• borangao / MESuSiE
  ☆18Updated this week
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆30Updated last year
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆27Updated 2 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆44Updated 3 years ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆27Updated last week
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆19Updated 3 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆29Updated last year
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆47Updated 2 months ago
• thewonlab / H-MAGMA
  ☆34Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 4 years ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆38Updated 2 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago