Software to perform multi-ancestry SNP fine-mapping on molecular data
☆34Aug 7, 2026Updated last month
Alternatives and similar repositories for sushie
Users that are interested in sushie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software to infer latent pleiotropic components from GWAS summary data☆17Jan 30, 2025Updated last year
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆43Apr 26, 2024Updated 2 years ago
- Cross-population fine-mapping☆46Dec 7, 2024Updated last year
- Scalable Ultra-Sparse Bayesian PCA☆32Feb 13, 2024Updated 2 years ago
- Repository to ZIP Plink2 LD files and have random access☆17Aug 12, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆22Aug 2, 2025Updated last year
- Mediated Expression Score Regression (MESC)☆30Nov 4, 2025Updated 10 months ago
- An accurate and efficient colocalization method accounting for multiple causal signals☆16Jun 3, 2024Updated 2 years ago
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆16Feb 27, 2020Updated 6 years ago
- Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX☆20Updated this week
- Tissue-Gene Fine-Mapping☆30Mar 20, 2025Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆43May 2, 2018Updated 8 years ago
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 4 years ago
- Leveraging functional information to improve GWAS summary statistic imputation☆21Aug 10, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GENI plots to visualise results from genome-wide association studies☆32Oct 14, 2024Updated last year
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆18Mar 17, 2026Updated 6 months ago
- PM520 Advanced Statistical Computing☆16Apr 3, 2026Updated 5 months ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆32Jun 18, 2023Updated 3 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆139Dec 9, 2024Updated last year
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆14Feb 14, 2024Updated 2 years ago
- ☆21Nov 15, 2024Updated last year
- Partitioning algorithm developed for LAVA☆17May 17, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆27Sep 2, 2021Updated 5 years ago
- Estimates partitioned heritability and enrichment for gene sets in complex human traits.☆27Updated this week
- R package for "sum of single effects" regression.☆267Updated this week
- FOCUS: Fine-mapping Of CaUsal gene Sets☆47Aug 30, 2023Updated 3 years ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 3 years ago
- Fine-mapping with infinitesimal effects☆20May 5, 2026Updated 4 months ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 6 months ago
- Software for estimating correlation of trait effect sizes across populations☆61May 30, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆14Jul 11, 2024Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- Stochastic trace estimation using JAX☆22Aug 27, 2026Updated 3 weeks ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆17Jun 24, 2025Updated last year
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Create Regional Association Plots☆13May 27, 2026Updated 3 months ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆29Jul 30, 2025Updated last year