Alternatives and similar repositories for cov-ldsc

Users that are interested in cov-ldsc are comparing it to the libraries listed below

• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆18Updated 9 years ago
• RayDebashree / metaUSAT
  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…
  ☆19Updated 4 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated last year
• Jmtorres138 / TACTICAL
  Tissue of ACTion scores for Investigating Complex trait-Associated Loci
  ☆13Updated 4 years ago
• xqwen / ptwas
  ☆18Updated 3 years ago
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 5 months ago
• mikelove / mrlocus
  Older repo for MRLocus. See new website for software usage guide:
  ☆15Updated last year
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆13Updated 4 months ago
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆12Updated 3 years ago
• explodecomputer / tryx
  ☆10Updated 4 years ago
• ghm17 / LOGODetect
  LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
  ☆27Updated 2 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆17Updated 9 years ago
• dongjunchung / GPA
  GPA: Genetic analysis incorporating Pleiotropy and Annotation
  ☆15Updated 5 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆19Updated 2 years ago
• bhattacharya-a-bt / MOSTWAS
  Multi-Omic Strategies for TWAS
  ☆13Updated 2 years ago
• EmilMiP / LTFHPlus
  Implementation of LTFH++
  ☆11Updated last week
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• yanglab-emory / TIGAR
  ☆21Updated 2 months ago
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆15Updated 10 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• JonJala / mama
  ☆17Updated 10 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 7 months ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 7 months ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• explodecomputer / random-metal
  Adding random effects model to the METAL software
  ☆13Updated last year