Alternatives and similar repositories for cov-ldsc

Users that are interested in cov-ldsc are comparing it to the libraries listed below

• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated last year
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated 11 months ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆20Updated 9 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Updated 8 months ago
• LizaDarrous / PheWAS-cluster
  ☆21Updated last year
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 11 months ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 3 years ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆18Updated 9 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 7 years ago
• RayDebashree / metaUSAT
  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…
  ☆20Updated 4 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆14Updated 2 years ago
• yanglab-emory / TIGAR
  ☆22Updated 3 weeks ago
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆16Updated 3 months ago
• UMCUGenetics / PolarMorphism
  Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics
  ☆14Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 5 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆15Updated 2 weeks ago
• JonJala / mama
  ☆17Updated last month
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆36Updated last year
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated last month
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• borangao / MESuSiE
  ☆20Updated 2 months ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆32Updated last year
• cuelee / pleio
  ☆19Updated 2 months ago