bogdanlab / focus
FOCUS: Fine-mapping Of CaUsal gene Sets
☆44Updated last year
Alternatives and similar repositories for focus:
Users that are interested in focus are comparing it to the libraries listed below
- Colocalization analysis of genetic association signals☆51Updated 2 months ago
- ☆34Updated 4 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆30Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 6 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆55Updated 4 months ago
- ☆32Updated last year
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Sequence kernel association test (SKAT)☆45Updated last week
- Leveraging functional information to improve GWAS summary statistic imputation☆20Updated 3 years ago
- A collection of various utilities for GWAS summary statistics☆26Updated 9 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆48Updated 4 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆28Updated 8 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- Statistical tools for Quantitative Genetic Analyses☆36Updated last month
- Make LocusZoom-like plots with your own LD matrix.☆39Updated 2 years ago
- Fast, integrative fine mapping with functional data☆57Updated 5 years ago
- Regional association plots☆26Updated 10 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- ☆46Updated 3 months ago
- ☆22Updated last year
- Software for estimating correlation of trait effect sizes across populations☆43Updated 2 years ago
- Scripts to run mQTL analyses as described in the ARIES mQTL paper☆9Updated 8 years ago
- ☆18Updated 11 months ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆18Updated 2 years ago
- Regional association plots☆25Updated 10 months ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 5 months ago
- ☆21Updated 3 months ago
- Read PLINK BED/BIM/FAM files into R☆40Updated 3 years ago
- Partners Biobank genomics data QC☆25Updated 4 years ago