USCbiostats / hJAMView external linksLinks
hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.
☆10Jan 19, 2024Updated 2 years ago
Alternatives and similar repositories for hJAM
Users that are interested in hJAM are comparing it to the libraries listed below
Sorting:
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Jul 20, 2023Updated 2 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- R Package for Hierarchical Regularized Regression to Incorporate External Data☆10Dec 17, 2025Updated last month
- Leveraging functional information to improve GWAS summary statistic imputation☆19Aug 10, 2021Updated 4 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- ☆15Apr 20, 2021Updated 4 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 7 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆25Dec 10, 2025Updated 2 months ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Sep 11, 2024Updated last year
- MR-link-2: pleiotropy robust cis MR☆21Aug 4, 2025Updated 6 months ago
- ☆20Sep 12, 2025Updated 5 months ago
- R wrapper for a Java Bayesian GLM variable selection package☆18Feb 7, 2020Updated 6 years ago
- ☆14Jun 24, 2024Updated last year
- ☆19Aug 7, 2025Updated 6 months ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Nov 26, 2023Updated 2 years ago
- ☆21Nov 15, 2024Updated last year
- ☆37Jul 4, 2021Updated 4 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Sep 1, 2022Updated 3 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 6 months ago
- GENI plots to visualise results from genome-wide association studies☆31Oct 14, 2024Updated last year
- An R package for Mendelian Randomization in Mediation setting☆17Mar 17, 2025Updated 10 months ago
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆12Aug 8, 2025Updated 6 months ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- ☆11Mar 16, 2022Updated 3 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 4 months ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 2 months ago
- ☆11Oct 14, 2022Updated 3 years ago
- Python script for multivariate GWAS meta-analysis☆24Dec 6, 2024Updated last year
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- R package for processing of GWAS output☆16Jul 9, 2024Updated last year