Quality control steps for GWAS
☆26Aug 11, 2023Updated 2 years ago
Alternatives and similar repositories for GWAS-QC
Users that are interested in GWAS-QC are comparing it to the libraries listed below
Sorting:
- A collection of commonly used resources for complex trait genetics.☆37Feb 10, 2026Updated last month
- GWAS Tutorial for Beginners☆389Feb 18, 2026Updated last month
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 9 months ago
- A collection of various utilities for GWAS summary statistics☆32May 14, 2024Updated last year
- PRS pipeline using PRS_CS☆15Oct 21, 2025Updated 4 months ago
- Code for creating cell-type-specific regulatory element annotation files☆20Jun 11, 2024Updated last year
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Mar 12, 2026Updated last week
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated 10 months ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆283Updated this week
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆129Dec 9, 2024Updated last year
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆72Oct 10, 2024Updated last year
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Mar 14, 2019Updated 7 years ago
- ☆21Aug 2, 2025Updated 7 months ago
- A Fine-Mapping pipeline☆22Sep 13, 2019Updated 6 years ago
- An accurate and efficient colocalization method accounting for multiple causal signals☆13Jun 3, 2024Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- ☆34Mar 7, 2021Updated 5 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Sep 26, 2025Updated 5 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- RSparsePro for robust fine-mapping in the presence of LD mismatch☆15Nov 4, 2024Updated last year
- Open Targets python framework for post-GWAS analysis☆54Updated this week
- CoMorMent-Containers☆36Feb 23, 2026Updated 3 weeks ago
- Repository☆10Oct 23, 2024Updated last year
- Analyses conducting GWAS across the UKBB diverse superpopulations☆64Oct 22, 2025Updated 4 months ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Oct 15, 2021Updated 4 years ago
- Data and code for the Effector index☆14Oct 13, 2020Updated 5 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆58Dec 16, 2025Updated 3 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆53Feb 1, 2019Updated 7 years ago
- ☆29Sep 23, 2019Updated 6 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Aug 13, 2025Updated 7 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 3 weeks ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago