RitchieLab / GWAS-QCLinks
Quality control steps for GWAS
☆25Updated 2 years ago
Alternatives and similar repositories for GWAS-QC
Users that are interested in GWAS-QC are comparing it to the libraries listed below
Sorting:
- Software for estimating correlation of trait effect sizes across populations☆50Updated 4 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated last year
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated last week
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆34Updated 4 months ago
- A collection of commonly used resources for complex trait genetics.☆33Updated this week
- Cross-population fine-mapping☆37Updated 10 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆58Updated last week
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- Colocalization analysis of genetic association signals☆53Updated 4 months ago
- Make LocusZoom-like plots with your own LD matrix.☆47Updated 3 years ago
- Fast, integrative fine mapping with functional data☆60Updated 6 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- ☆24Updated 4 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Statistical tools for Quantitative Genetic Analyses☆38Updated 2 months ago
- ☆63Updated 3 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 6 months ago
- ☆23Updated 3 months ago
- A Fine-Mapping pipeline☆21Updated 6 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Development for SAIGE and SAIGE-GENE(+)☆84Updated last month
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆35Updated 4 years ago
- An accurate and efficient HLA imputation method.☆26Updated 2 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆30Updated last week
- Sequence kernel association test (SKAT)☆52Updated 2 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆42Updated 10 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆50Updated 7 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆85Updated 3 years ago