Quality control steps for GWAS
☆27Aug 11, 2023Updated 3 years ago
Alternatives and similar repositories for GWAS-QC
Users that are interested in GWAS-QC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality control pipeline for human exome/genome cohorts☆10Updated this week
- A collection of commonly used resources for complex trait genetics.☆48Jul 9, 2026Updated 3 months ago
- A Fine-Mapping pipeline☆23Sep 13, 2019Updated 7 years ago
- A collection of various utilities for GWAS summary statistics☆35May 14, 2024Updated 2 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆33Mar 7, 2021Updated 5 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆19Oct 15, 2021Updated 5 years ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆75Oct 10, 2024Updated 2 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 4 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆40Jun 3, 2025Updated last year
- ggplot2-based Manhattan plot☆13Oct 18, 2022Updated 4 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 20, 2026Updated last week
- GWAS Tutorial for Beginners☆491Aug 3, 2026Updated 2 months ago
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Feb 13, 2023Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆76Apr 26, 2026Updated 6 months ago
- Code for creating cell-type-specific regulatory element annotation files☆21Jun 11, 2024Updated 2 years ago
- PRS pipeline using PRS_CS☆17Oct 6, 2026Updated 3 weeks ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆312Sep 25, 2026Updated last month
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆15Jul 2, 2025Updated last year
- R package for processing of GWAS output☆17Jul 9, 2024Updated 2 years ago
- ☆22Jun 12, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆54Feb 1, 2019Updated 7 years ago
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆57Oct 19, 2026Updated last week
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆14Mar 14, 2019Updated 7 years ago
- Open Targets python framework for post-GWAS analysis☆60Updated this week
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆43May 2, 2018Updated 8 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆41Feb 8, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 3 years ago
- Estimates partitioned heritability and enrichment for gene sets in complex human traits.☆28Sep 18, 2026Updated last month
- ☆23Aug 2, 2025Updated last year
- ☆26Jan 8, 2026Updated 9 months ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆143Dec 9, 2024Updated last year
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 7 months ago