shz9 / magenpy
Modeling and Analysis of (Statistical) Genetics data in python
☆16Updated 2 weeks ago
Alternatives and similar repositories for magenpy:
Users that are interested in magenpy are comparing it to the libraries listed below
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated 2 years ago
- Software for linkage disequilibrium graphical models☆16Updated last week
- A new model and algorithm for multivariate Bayesian variable selection regression.☆21Updated 11 months ago
- Older repo for MRLocus. See new website for software usage guide:☆15Updated last year
- Stratified squared trans-ethnic genetic correlation☆12Updated 2 years ago
- Scalable Ultra-Sparse Bayesian PCA☆30Updated last year
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated last month
- Colocalisation pipeline for Open Targets Genetics☆17Updated 3 years ago
- Data and code for the Effector index☆13Updated 4 years ago
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 4 years ago
- A unified framework to estimate genetic effects on the variance of quantitative traits☆10Updated 2 years ago
- Software implementing stratified LD fourth moments regression.☆10Updated 5 years ago
- ☆17Updated 3 years ago
- A faster and angrier package for EBMF.☆11Updated 2 months ago
- Toy simulations and analyses of heritability and genetic differences☆11Updated 9 months ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated last year
- ☆13Updated 2 years ago
- Implementation of LTFH++☆10Updated 10 months ago
- R wrapper for a Java Bayesian GLM variable selection package☆16Updated 5 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- Scripts used for generating Neale Lab UKB results☆19Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium