shz9 / magenpyView external linksLinks
Modeling and Analysis of (Statistical) Genetics data in python
☆16Jun 12, 2025Updated 8 months ago
Alternatives and similar repositories for magenpy
Users that are interested in magenpy are comparing it to the libraries listed below
Sorting:
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 4 years ago
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated last year
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 8 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- A pipeline for phasing UK Biobank whole genome sequence data☆19Mar 21, 2023Updated 2 years ago
- Mixed Model Package For Genome-wide association mapping.☆17Mar 31, 2019Updated 6 years ago
- Documentation on new GWAS Summary Statistics Standard☆23Nov 19, 2025Updated 2 months ago
- Code for creating cell-type-specific regulatory element annotation files☆19Jun 11, 2024Updated last year
- ☆22Jan 15, 2026Updated last month
- ☆29Sep 4, 2023Updated 2 years ago
- ☆10Feb 25, 2024Updated last year
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Variational Inference of Polygenic Risk Scores☆28Apr 22, 2025Updated 9 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- A list of awesome tools for complex trait genetics.☆83Jan 28, 2025Updated last year
- ☆30Aug 16, 2021Updated 4 years ago
- Scalable Ultra-Sparse Bayesian PCA☆31Feb 13, 2024Updated 2 years ago
- Genetics ToolboX R package☆32Feb 10, 2020Updated 6 years ago
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- LASSO for GWAS with summary statistics☆78Sep 24, 2020Updated 5 years ago
- Large-scale Bayesian variable selection for R and MATLAB.☆41Mar 22, 2023Updated 2 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆39Oct 13, 2021Updated 4 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- This is the public repo for the course HMMA238 'Software Development'☆10Apr 20, 2021Updated 4 years ago
- ☆11Oct 10, 2024Updated last year
- ☆24Nov 9, 2017Updated 8 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆13Feb 26, 2021Updated 4 years ago
- Repository☆10Oct 23, 2024Updated last year
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Jul 19, 2024Updated last year
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 3 years ago
- R package for two-sample Mendelian randomization using the robust adjusted profile score☆40Oct 31, 2025Updated 3 months ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated this week
- Learning to Program via Python, and Scientific Python for Programmers course material☆13Jan 23, 2025Updated last year