Modeling and Analysis of (Statistical) Genetics data in python
☆16Jun 12, 2025Updated 9 months ago
Alternatives and similar repositories for magenpy
Users that are interested in magenpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Feb 2, 2023Updated 3 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 4 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated last year
- Code for creating cell-type-specific regulatory element annotation files☆20Jun 11, 2024Updated last year
- Documentation on new GWAS Summary Statistics Standard☆24Nov 19, 2025Updated 4 months ago
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 8 years ago
- Mixed Model Package For Genome-wide association mapping.☆17Mar 31, 2019Updated 6 years ago
- Fast inference for Generalised Linear Mixed Models.☆13Jan 17, 2025Updated last year
- Variational Inference of Polygenic Risk Scores☆28Apr 22, 2025Updated 11 months ago
- Scalable Ultra-Sparse Bayesian PCA☆33Feb 13, 2024Updated 2 years ago
- Source code for paper "Trajectory of Alternating Direction Method of Multipliers and Adaptive Acceleration" of NeurIPS 2019☆10Jan 25, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆12Oct 10, 2024Updated last year
- Convert bioinformatics file formats to Zarr☆45Mar 2, 2026Updated 3 weeks ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Feb 8, 2026Updated last month
- A list of awesome tools for complex trait genetics.☆84Jan 28, 2025Updated last year
- ☆22Mar 21, 2026Updated last week
- ☆13Apr 23, 2025Updated 11 months ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Analysis of JOSS data and statistics☆13Mar 18, 2026Updated last week
- LASSO for GWAS with summary statistics☆79Sep 24, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- A pipeline for phasing UK Biobank whole genome sequence data☆19Mar 21, 2023Updated 3 years ago
- Gaussian Process Regression using Spectral Mixture in GPflow☆10Jan 22, 2020Updated 6 years ago
- ☆30Aug 16, 2021Updated 4 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆59Feb 12, 2021Updated 5 years ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆39Oct 13, 2021Updated 4 years ago
- R package for two-sample Mendelian randomization using the robust adjusted profile score☆40Oct 31, 2025Updated 4 months ago
- Large-scale Bayesian variable selection for R and MATLAB.☆41Mar 22, 2023Updated 3 years ago
- Instrumental Variable Quantile Regression☆12Jul 17, 2023Updated 2 years ago
- slurmR: A Lightweight Wrapper for Slurm☆60Jun 17, 2024Updated last year
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 1, 2025Updated 9 months ago