broadinstitute / tensorqtlLinks
Ultrafast GPU-enabled QTL mapper
☆199Updated 5 months ago
Alternatives and similar repositories for tensorqtl
Users that are interested in tensorqtl are comparing it to the libraries listed below
Sorting:
- A factor analysis package☆103Updated 13 years ago
- Collection of analysis tools for quantitative trait loci☆61Updated last month
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆127Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆175Updated last week
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆176Updated last year
- Generate IGV style locus tracks from bigWig files in R☆174Updated last year
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- ☆63Updated last year
- methods for functional summary-based imputation☆90Updated 3 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆104Updated 3 years ago
- ☆144Updated 6 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Detecting sites of genomic enrichment☆197Updated 2 years ago
- ☆120Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆229Updated 6 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆110Updated 4 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆198Updated 5 years ago
- ☆142Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆118Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆192Updated last year
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆168Updated 3 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆236Updated last week