broadinstitute / tensorqtl
Ultrafast GPU-enabled QTL mapper
☆173Updated 2 weeks ago
Alternatives and similar repositories for tensorqtl:
Users that are interested in tensorqtl are comparing it to the libraries listed below
- A factor analysis package☆99Updated 12 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆104Updated 3 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 9 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Easily download publicly available GWAS summary statistics.☆75Updated last year
- methods for functional summary-based imputation☆79Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- ☆72Updated 3 years ago
- ☆129Updated 6 years ago
- ☆147Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆107Updated 7 months ago
- ☆71Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆111Updated last month
- Detecting sites of genomic enrichment☆190Updated last year
- Linear mixed model for genomic analyses.☆104Updated 3 years ago
- ☆116Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated 2 months ago
- Generate IGV style locus tracks from bigWig files in R☆155Updated 4 months ago
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- Application for making ENCODE Blacklists☆295Updated 3 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Find causal cell-types underlying complex trait genetics☆82Updated 3 weeks ago
- ☆140Updated 6 years ago
- Cross-population polygenic prediction☆79Updated 4 months ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆166Updated last year
- A SingleCell RNASeq pre-processing snakemake workflow☆147Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆146Updated 4 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 3 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆80Updated 2 years ago