Alternatives and similar repositories for FactorGo

Users that are interested in FactorGo are comparing it to the libraries listed below

• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• BioPsyk / cleansumstats
  Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
  ☆19Updated last week
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• precimed / gsa-mixer
  ☆16Updated 3 months ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 7 months ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆18Updated 9 years ago
• cuelee / pleio
  ☆19Updated last year
• yanglab-emory / TIGAR
  ☆21Updated 2 months ago
• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆16Updated 5 months ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆17Updated 9 years ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated last year
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆17Updated 3 months ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated last year
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 2 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆25Updated this week
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆23Updated 7 months ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated last year
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated 10 months ago
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆20Updated 3 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆15Updated 3 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆32Updated last year
• wouterpeyrot / CCGWAS
  ☆19Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• UMCUGenetics / PolarMorphism
  Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics
  ☆14Updated last year
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 7 months ago
• hakyimlab / mixqtl
  Total and allele specific read based cis-QTL, fine-mapping, and prediction
  ☆9Updated 4 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆21Updated 7 months ago