Alternatives and similar repositories for FactorGo:

Users that are interested in FactorGo are comparing it to the libraries listed below

• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆21Updated 6 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆14Updated 2 months ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆21Updated 3 months ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆18Updated 8 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆15Updated 9 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆26Updated 3 months ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆26Updated 8 months ago
• cuelee / pleio
  ☆18Updated 10 months ago
• yanglab-emory / TIGAR
  ☆21Updated 2 months ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 2 years ago
• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆15Updated last month
• hakyimlab / mixqtl
  Total and allele specific read based cis-QTL, fine-mapping, and prediction
  ☆9Updated 4 years ago
• cumc / pecotmr
  Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆20Updated this week
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆14Updated 6 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆26Updated 8 months ago
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆26Updated last year
• adriaan-vd-graaf / mrlink2
  MR-link 2 is a summary statistics _cis_ MR method that is pleiotropy robust.
  ☆13Updated last month
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 6 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 10 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 9 months ago
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆20Updated 3 years ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆11Updated 5 months ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆18Updated last year
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• BioPsyk / cleansumstats
  Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
  ☆13Updated last month