Software to infer latent pleiotropic components from GWAS summary data
☆15Jan 30, 2025Updated last year
Alternatives and similar repositories for FactorGo
Users that are interested in FactorGo are comparing it to the libraries listed below
Sorting:
- ☆13Feb 2, 2023Updated 3 years ago
- ☆15Apr 20, 2021Updated 4 years ago
- Scalable Ultra-Sparse Bayesian PCA☆33Feb 13, 2024Updated 2 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆30Jun 18, 2023Updated 2 years ago
- ☆21Sep 12, 2025Updated 6 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- ☆35Jun 15, 2023Updated 2 years ago
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Oct 27, 2023Updated 2 years ago
- ☆50Jun 24, 2025Updated 8 months ago
- TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.☆16Oct 3, 2024Updated last year
- Leveraging functional information to improve GWAS summary statistic imputation☆20Aug 10, 2021Updated 4 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆10Jan 19, 2024Updated 2 years ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆39Apr 26, 2024Updated last year
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- ☆21Nov 15, 2024Updated last year
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆24Sep 4, 2025Updated 6 months ago
- ☆20Feb 17, 2021Updated 5 years ago
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆44Mar 4, 2026Updated 2 weeks ago
- 3D GWAS across multiple phenotypes☆13Oct 11, 2022Updated 3 years ago
- ☆57Jan 16, 2025Updated last year
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 6 months ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 8 months ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- MR-link-2: pleiotropy robust cis MR☆21Aug 4, 2025Updated 7 months ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 9 months ago
- Multivariate Omnibus Statistical Test☆22Jul 2, 2024Updated last year
- ☆81Nov 9, 2025Updated 4 months ago
- ☆24Jan 8, 2026Updated 2 months ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 6 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Sep 26, 2024Updated last year
- R script that performs gene-set or gene property analysis using TWAS results.☆33Sep 11, 2024Updated last year
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- An R package for Mendelian Randomization☆39Mar 27, 2024Updated last year
- Cross-population fine-mapping☆42Dec 7, 2024Updated last year
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 4 years ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆59Feb 12, 2021Updated 5 years ago