cumc / bioworkflows
In-house computational biology workflows at Columbia Neurology
☆32Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for bioworkflows
- Create LocusZoom-style plots in R.☆20Updated last year
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆36Updated last year
- ☆32Updated last year
- DEPICT code, instructions and an example☆48Updated 2 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆25Updated 2 years ago
- ☆42Updated 3 weeks ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆39Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated 3 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆49Updated 11 months ago
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- R package for quality control of plink genetic datasets☆55Updated last month
- Configs and descriptions of circos plots created on FUMA web application☆11Updated 6 years ago
- Statistical fine-mapping pipeline in FinnGen☆26Updated last week
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- Colocalization analysis of genetic association signals☆47Updated this week
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 2 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆27Updated 5 months ago
- Reading, querying and writing GWAS summary data in VCF format☆68Updated 6 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆30Updated last month
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆40Updated 2 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆40Updated 6 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Updated 2 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆43Updated last year
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆22Updated 4 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Fast, integrative fine mapping with functional data☆55Updated 5 years ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆14Updated 2 months ago
- ☆64Updated 2 years ago