In-house computational biology workflows at Columbia Neurology
☆36Sep 7, 2025Updated 9 months ago
Alternatives and similar repositories for bioworkflows
Users that are interested in bioworkflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 3 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆48Updated this week
- ☆21Nov 15, 2024Updated last year
- Statistical tools for Quantitative Genetic Analyses☆39Apr 16, 2026Updated last month
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Mar 16, 2026Updated 3 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Read PLINK BED/BIM/FAM files into R☆44Jul 26, 2021Updated 4 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆47Mar 16, 2026Updated 2 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆36Jun 17, 2025Updated 11 months ago
- software package for integrative genetic association analysis☆37Jul 8, 2023Updated 2 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 9 months ago
- A Fine-Mapping pipeline☆22Sep 13, 2019Updated 6 years ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated 2 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆59Mar 24, 2026Updated 2 months ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆49Dec 16, 2024Updated last year
- Undergraduate course of Introduction of Computational Biology☆17Jan 26, 2026Updated 4 months ago
- Example jobs for popular applications on HCC clusters.☆20May 1, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆16Aug 16, 2024Updated last year
- GTEx analysis scripts☆20Mar 14, 2017Updated 9 years ago
- ☆68Dec 30, 2021Updated 4 years ago
- Primo☆16Sep 2, 2021Updated 4 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 4 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- scripts for RNA-Seq analysis☆28Feb 20, 2022Updated 4 years ago
- Mediated Expression Score Regression (MESC)☆28Nov 4, 2025Updated 7 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A new model and algorithm for multivariate Bayesian variable selection regression.☆30May 25, 2026Updated 3 weeks ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 3 years ago
- ☆13Apr 14, 2026Updated 2 months ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Feb 9, 2026Updated 4 months ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- R package for "sum of single effects" regression.☆260Updated this week