Alternatives and similar repositories for bioworkflows

Users that are interested in bioworkflows are comparing it to the libraries listed below

• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated 3 weeks ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆42Updated 2 years ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆43Updated 11 months ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• perslab / depict
  DEPICT code, instructions and an example
  ☆51Updated 3 years ago
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆30Updated 4 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 5 months ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated this week
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated 3 months ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated last week
• MRCIEU / PhenoSpD
  ☆18Updated 8 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated last week
• zhouhufeng / FAVORannotator
  ☆21Updated 2 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆54Updated last month
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• fhormoz / caviar
  ☆63Updated 3 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆25Updated 2 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 4 months ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• Richard-Packer / DeepPheWAS
  An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)
  ☆15Updated last year
• Genentech / midasHLA
  R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…
  ☆14Updated last year
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago