Alternatives and similar repositories for geneidx:

Users that are interested in geneidx are comparing it to the libraries listed below

• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• agshumate / LiftoffTools
  ☆24Updated last year
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆28Updated last week
• at-cg / RAFT
  ☆21Updated 3 months ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆61Updated 4 years ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆20Updated last month
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆24Updated 2 months ago
• dvdylus / read2tree
  ☆20Updated 2 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆35Updated last month
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆26Updated 2 months ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated last year
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆36Updated last month
• pierrepeterlongo / back_to_sequences
  ☆41Updated 3 weeks ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆24Updated 5 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆54Updated 2 weeks ago
• human-pangenomics / hprc-tutorials
  ☆12Updated 8 months ago
• Gaius-Augustus / Tiberius
  deep learning gene finder
  ☆40Updated 3 weeks ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆29Updated 4 years ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 2 months ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆24Updated last week
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• gengit / PosiGene
  ☆26Updated 3 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated last month
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆17Updated last week
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆38Updated 3 weeks ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆16Updated last year
• anuradhawick / MetaBCC-LR
  Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
  ☆20Updated 3 months ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated last month