guigolab / geneidxLinks
Nextflow pipeline for genome annotation of protein-coding genes
☆16Updated last year
Alternatives and similar repositories for geneidx
Users that are interested in geneidx are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆26Updated 2 months ago
- ☆16Updated 2 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆27Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ULTRA Locates Tandemly Repetitive Areas☆31Updated 3 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated 2 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆24Updated 3 weeks ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 8 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- FastK based version of Merqury☆28Updated 2 months ago
- ☆21Updated 6 months ago
- ☆28Updated 2 years ago
- ☆20Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago