liudan111 / EvoMILView external linksLinks
Prediction of virus-host association using protein language models and multiple instance learning
☆21Jun 13, 2024Updated last year
Alternatives and similar repositories for EvoMIL
Users that are interested in EvoMIL are comparing it to the libraries listed below
Sorting:
- ☆17May 26, 2022Updated 3 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- ☆17Oct 7, 2024Updated last year
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆11Jul 4, 2025Updated 7 months ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated 3 weeks ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- tiara – a tool for DNA sequence classification☆75Mar 2, 2024Updated last year
- A Swiss-Army-Knife for Bioinformaticians☆14Jan 27, 2026Updated 2 weeks ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- This is a repository for CAMPER.☆16Mar 18, 2024Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 10 months ago
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆21Aug 15, 2025Updated 5 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Jul 27, 2022Updated 3 years ago
- Unified Human Gut Virome Catalog☆41Nov 10, 2025Updated 3 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Dec 20, 2024Updated last year
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆46Jan 26, 2026Updated 2 weeks ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Aug 3, 2021Updated 4 years ago
- Unleash the full power of your k-mers!☆24Jan 13, 2026Updated last month
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated last year
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated 11 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Model for taxonomy classification☆16May 28, 2021Updated 4 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- ☆18May 13, 2021Updated 4 years ago
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆21Updated this week
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Sep 9, 2025Updated 5 months ago
- ☆19Jun 10, 2024Updated last year
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- A place to store and edit the lab handbook for UCL courses that involve the use of open source tools in molecular docking.☆22Aug 9, 2022Updated 3 years ago
- Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking☆22Jul 3, 2025Updated 7 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆34Sep 20, 2022Updated 3 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 9 months ago