☆209Dec 6, 2025Updated 3 months ago
Alternatives and similar repositories for SeuratExtend
Users that are interested in SeuratExtend are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆293Mar 5, 2026Updated 2 weeks ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆297Mar 16, 2026Updated last week
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆219Mar 2, 2026Updated 3 weeks ago
- Methods to discover gene programs on single-cell data☆178Sep 26, 2025Updated 5 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated last month
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- Community-provided extensions to Seurat☆358Feb 17, 2026Updated last month
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Nov 28, 2025Updated 3 months ago
- ☆47May 4, 2024Updated last year
- Fast Wilcoxon and auROC☆206Nov 8, 2024Updated last year
- reticulate-free single cell format conversion☆209Mar 16, 2026Updated last week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆630Mar 11, 2026Updated last week
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Hierarchical Cell Annotation☆27Nov 17, 2024Updated last year
- High dimensional weighted gene co-expression network analysis☆468Mar 13, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆423Sep 4, 2025Updated 6 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆227Updated this week
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆567Mar 4, 2026Updated 2 weeks ago
- ☆57Jan 2, 2024Updated 2 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Nov 1, 2025Updated 4 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆533Mar 21, 2025Updated last year
- ☆49Oct 29, 2025Updated 4 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated 11 months ago
- ☆14Jun 10, 2025Updated 9 months ago
- ☆122Sep 4, 2025Updated 6 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆444Jan 22, 2026Updated 2 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆39Nov 10, 2025Updated 4 months ago
- ☆129Mar 27, 2022Updated 3 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- Easy single cell analysis platform for enrichment☆216Jan 4, 2026Updated 2 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆89Apr 16, 2025Updated 11 months ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆268Jan 13, 2026Updated 2 months ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- BulkSignalR☆27Jul 24, 2025Updated 8 months ago
- Gain biological insights using LLM.☆16Jan 26, 2026Updated last month