☆224Jun 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for SeuratExtend
Users that are interested in SeuratExtend are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆303Updated this week
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆307Updated this week
- Methods to discover gene programs on single-cell data☆192Jun 5, 2026Updated 3 weeks ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆226Mar 2, 2026Updated 4 months ago
- Hierarchical Cell Annotation☆31Nov 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 4 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- Community-provided extensions to Seurat☆366Updated this week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆653Mar 11, 2026Updated 3 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 7 months ago
- ☆46May 4, 2024Updated 2 years ago
- An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.☆272Jun 27, 2026Updated last week
- High dimensional weighted gene co-expression network analysis☆481Jun 16, 2026Updated 2 weeks ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆260Jun 19, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 6 months ago
- Fast Wilcoxon and auROC☆213May 5, 2026Updated last month
- reticulate-free single cell format conversion☆219Mar 16, 2026Updated 3 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- ☆59Jan 2, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆630Mar 4, 2026Updated 4 months ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51May 17, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆49Oct 29, 2025Updated 8 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated 2 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆553Mar 21, 2025Updated last year
- ☆128Sep 4, 2025Updated 10 months ago
- ☆14Jun 10, 2025Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆467Jan 22, 2026Updated 5 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆75Oct 16, 2025Updated 8 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated last year
- ☆132Mar 27, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17Sep 28, 2022Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 7 months ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 7 months ago
- Easy single cell analysis platform for enrichment☆227Apr 3, 2026Updated 3 months ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆22Feb 4, 2024Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆292Jun 24, 2026Updated last week
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year