huayc09 / SeuratExtendLinks
☆173Updated 3 weeks ago
Alternatives and similar repositories for SeuratExtend
Users that are interested in SeuratExtend are comparing it to the libraries listed below
Sorting:
- ☆176Updated 4 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆208Updated last month
- Gene set scoring for single-cell data☆165Updated this week
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- Clone of the Bioconductor repository for the SingleR package.☆195Updated 2 months ago
- A tool for detecting somatic variants in single cell data☆214Updated last year
- Shiny Interactive Web Apps for Single-Cell Data☆194Updated 5 months ago
- reticulate-free single cell format conversion☆187Updated last week
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆231Updated last week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆295Updated 2 years ago
- ☆253Updated last year
- Easy single cell analysis platform for enrichment☆193Updated last month
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆272Updated last week
- Haplotype-aware CNV analysis from single-cell RNA-seq☆190Updated 2 weeks ago
- Analysis pipeline for ATAC-seq data☆76Updated last year
- my notes for scATACseq analysis☆132Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- Clustering scRNAseq by genotypes☆189Updated 10 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆203Updated 2 weeks ago
- An implement R package to visualize GSEA results☆189Updated 3 weeks ago
- ☆110Updated last year
- Convert Seurat objects to 10x Genomics Loupe files.☆139Updated 2 months ago
- Scaling Single Cell Analysis to Millions of Cells☆224Updated this week
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆111Updated 7 months ago