NMikolajewicz / scMikoLinks
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
☆31Updated last week
Alternatives and similar repositories for scMiko
Users that are interested in scMiko are comparing it to the libraries listed below
Sorting:
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆38Updated last week
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆44Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- R package for Bioconductor submission☆37Updated 2 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆35Updated 6 months ago
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆29Updated 3 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 3 weeks ago
- Pseudotime Analysis for Bulk Data☆18Updated last year
- ☆50Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 5 months ago
- ☆43Updated 4 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆18Updated last year
- Cell type pipes for R☆52Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆27Updated last month
- GLASS consortium☆14Updated 3 years ago
- ☆48Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Updated this week
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago