R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
☆34Nov 28, 2025Updated 9 months ago
Alternatives and similar repositories for scMiko
Users that are interested in scMiko are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 5 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- ☆29Apr 1, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 6 months ago
- ☆40Aug 4, 2021Updated 5 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- ☆47Jun 27, 2023Updated 3 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆23Oct 8, 2025Updated 10 months ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 10 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆127Sep 7, 2024Updated 2 years ago
- Various utility functions for Seurat v5 single-cell analysis☆71Updated this week
- ☆10Nov 5, 2023Updated 2 years ago
- ☆229Jun 13, 2026Updated 2 months ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- R package for analysing single cell data☆68Dec 8, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 10 months ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 3 years ago
- ☆90Jun 29, 2024Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆35Jul 2, 2026Updated 2 months ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆40Aug 31, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- Bayesian network plot for the enrichment analysis results☆68Oct 2, 2024Updated last year
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆99Nov 30, 2023Updated 2 years ago
- BulkSignalR☆28Jun 23, 2026Updated 2 months ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago