haniffalab / scRNA-seq_analysisLinks
Single cell RNA-seq analysis bundle
☆37Updated 6 years ago
Alternatives and similar repositories for scRNA-seq_analysis
Users that are interested in scRNA-seq_analysis are comparing it to the libraries listed below
Sorting:
- Functions for single cell data analysis☆32Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 8 months ago
- Functional Inference of Gene Regulation☆49Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- ☆50Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ☆64Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- ☆41Updated 4 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆45Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated last week
- SCDC☆45Updated 6 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆112Updated 7 months ago
- Inferring CNV data from single cell ATAC seq☆25Updated 6 months ago
- ☆63Updated 5 years ago
- R package for semi-supervised single-cell data integration☆91Updated last week
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Updated 3 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆67Updated last year
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Methods for decontamination of single cell data☆53Updated 10 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago