bcgsc / RNA-ScoopLinks
interactive visualization of single-cell transcriptomes
☆11Updated last year
Alternatives and similar repositories for RNA-Scoop
Users that are interested in RNA-Scoop are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 10 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- ☆31Updated 4 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated last month
- ☆27Updated 7 months ago
- ☆49Updated 10 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- ☆20Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆32Updated 11 months ago
- Single-cell Iso Prep☆16Updated last year
- ☆34Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 3 weeks ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Python package with CLI for the analysis of single cell methylation data.☆13Updated 7 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆17Updated 2 months ago
- ☆17Updated 2 years ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆15Updated 2 years ago
- cell type specific, trait-associated gene regulation☆26Updated 2 months ago
- ☆32Updated 5 years ago
- RiboPlotR package for Ribo-plot☆15Updated last year
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆18Updated last week