bcgsc / RNA-ScoopLinks
interactive visualization of single-cell transcriptomes
☆11Updated 2 years ago
Alternatives and similar repositories for RNA-Scoop
Users that are interested in RNA-Scoop are comparing it to the libraries listed below
Sorting:
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated 3 weeks ago
- ☆53Updated last year
- ☆39Updated 4 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆32Updated 11 months ago
- ☆33Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated 3 weeks ago
- ☆12Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆18Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆24Updated 8 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- ☆25Updated 2 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- ☆18Updated 2 years ago
- https://molecular-neurogenetics.github.io/truster/☆11Updated 5 months ago
- ☆34Updated 6 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- R package of CSOmap(developing☆13Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19Updated 7 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- Single-cell Iso Prep☆17Updated 2 years ago
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆21Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago