BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
☆25Jul 11, 2021Updated 5 years ago
Alternatives and similar repositories for BingleSeq
Users that are interested in BingleSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆18Feb 22, 2022Updated 4 years ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 5 years ago
- Brings SingleCellExperiment objects to the tidyverse☆37Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- Simple scVI implementation☆13Jul 13, 2026Updated last week
- ☆32Apr 9, 2022Updated 4 years ago
- ☆11Jun 10, 2024Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 4 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- R package for metabolic enzyme enrichment anaylsis☆14Oct 24, 2025Updated 9 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Jul 26, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Jul 7, 2023Updated 3 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51May 17, 2026Updated 2 months ago
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- ☆16Nov 3, 2023Updated 2 years ago
- Function Enrichment analysis and Network construction☆16Apr 25, 2026Updated 3 months ago
- R package for single-cell RNA-sequencing analysis☆17Sep 30, 2025Updated 9 months ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for benchmarking single cell analysis methods☆33Oct 4, 2023Updated 2 years ago
- R package to do the Ligand Receptor Analysis Visualization☆50Jun 23, 2026Updated last month
- Machine learning workshop presented at GLBIO 2016☆12May 17, 2016Updated 10 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆37Oct 7, 2024Updated last year
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated 2 months ago
- scDataviz: single cell dataviz and downstream analyses☆67Sep 24, 2021Updated 4 years ago
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆30Mar 18, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆22Updated this week
- ☆14Oct 14, 2022Updated 3 years ago
- R package for bcbio single-cell RNA-seq analysis.☆31Sep 9, 2024Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated last month
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago