BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
☆23Jul 11, 2021Updated 4 years ago
Alternatives and similar repositories for BingleSeq
Users that are interested in BingleSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 2 weeks ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- ☆31Apr 9, 2022Updated 4 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Feb 22, 2022Updated 4 years ago
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 5 months ago
- R package for Bioconductor submission☆40Dec 8, 2022Updated 3 years ago
- Simple scVI implementation☆12Mar 16, 2026Updated last month
- ☆17Sep 28, 2022Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- ☆11Jun 10, 2024Updated last year
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 3 years ago
- ☆16Nov 3, 2023Updated 2 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 6 months ago
- ☆14Jul 7, 2023Updated 2 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Nov 1, 2025Updated 5 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Jul 26, 2021Updated 4 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- R package for single-cell RNA-sequencing analysis☆15Sep 30, 2025Updated 6 months ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆21Feb 10, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package to do the Ligand Receptor Analysis Visualization☆49Mar 24, 2026Updated 3 weeks ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆35Jun 19, 2025Updated 9 months ago
- ☆14Oct 14, 2022Updated 3 years ago
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Oct 7, 2024Updated last year
- Machine learning workshop presented at GLBIO 2016☆11May 17, 2016Updated 9 years ago
- Advanced steps of the OSCA book☆14Nov 19, 2025Updated 4 months ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- Function Enrichment analysis and Network construction☆14Dec 10, 2025Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆30Mar 18, 2026Updated 3 weeks ago
- sharing interactive single cell gene expression visualizations from Seurat☆12May 18, 2023Updated 2 years ago
- R package for bcbio single-cell RNA-seq analysis.☆31Sep 9, 2024Updated last year
- ☆10Mar 11, 2025Updated last year