dbdimitrov / BingleSeqView external linksLinks
BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
☆22Jul 11, 2021Updated 4 years ago
Alternatives and similar repositories for BingleSeq
Users that are interested in BingleSeq are comparing it to the libraries listed below
Sorting:
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 3 months ago
- ☆31Apr 9, 2022Updated 3 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Feb 22, 2022Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆50Nov 1, 2025Updated 3 months ago
- R package for Bioconductor submission☆38Dec 8, 2022Updated 3 years ago
- Difference in Intercellular Communication from scRNA-seq data☆24Oct 14, 2025Updated 4 months ago
- Multi-Enrichment Analysis of Gene Set Enrichment Analysis Results☆26Feb 4, 2026Updated last week
- ☆14Oct 14, 2022Updated 3 years ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- ☆10May 25, 2025Updated 8 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Jul 26, 2021Updated 4 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 3 months ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- Design of single- and multi-stage multi-arm clinical trials☆15Jan 4, 2024Updated 2 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆66Nov 23, 2025Updated 2 months ago
- R package to do the Ligand Receptor Analysis Visualization☆49Nov 27, 2025Updated 2 months ago
- Bullseye analysis pipeline for DART-seq analysis☆15Jul 8, 2025Updated 7 months ago
- UHCA☆11Jan 23, 2025Updated last year
- sharing interactive single cell gene expression visualizations from Seurat☆11May 18, 2023Updated 2 years ago
- ☆16Nov 3, 2023Updated 2 years ago
- ☆11Jun 10, 2024Updated last year
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 3 months ago
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- Simple scVI implementation☆12Jan 19, 2026Updated 3 weeks ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 5 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Feb 20, 2024Updated last year
- The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcri…☆23Nov 30, 2022Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated 9 months ago
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆30Updated this week
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57May 15, 2025Updated 8 months ago