BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
☆25Jul 11, 2021Updated 5 years ago
Alternatives and similar repositories for BingleSeq
Users that are interested in BingleSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 7 months ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆18Feb 22, 2022Updated 4 years ago
- Brings SingleCellExperiment objects to the tidyverse☆37Sep 15, 2026Updated last month
- Presentation at the Single Cell Nanocourse in Spring 2017 at Harvard Medical School☆10Mar 7, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- visualization tools for exon/junction coverage☆12Dec 30, 2019Updated 6 years ago
- ☆32Apr 9, 2022Updated 4 years ago
- R package for metabolic enzyme enrichment anaylsis☆14Oct 24, 2025Updated last year
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- R package for single-cell RNA-sequencing analysis☆17Sep 30, 2025Updated last year
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- Function Enrichment analysis and Network construction☆16Oct 26, 2026Updated last week
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆76Dec 2, 2020Updated 5 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 5 years ago
- scDissector is an exploratory data analysis tool for clustered single-cell RNA-seq data. The tool has been developed and implemented as R…☆20Jul 21, 2023Updated 3 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆50Oct 12, 2026Updated 3 weeks ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Jul 26, 2021Updated 5 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- R package for benchmarking single cell analysis methods☆34Oct 4, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Nov 5, 2023Updated 3 years ago
- CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis☆10May 16, 2019Updated 7 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 4 years ago
- Simple scVI implementation☆13Updated this week
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 4 years ago
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated 2 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Sep 14, 2026Updated last month
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- ☆12Jun 10, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 4 years ago
- Difference in Intercellular Communication from scRNA-seq data☆28Oct 14, 2025Updated last year
- R package to visualize scRNA sequencing data.☆21Feb 4, 2022Updated 4 years ago
- IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)☆13Aug 26, 2026Updated 2 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 5 months ago
- R package for bcbio single-cell RNA-seq analysis.☆31Sep 9, 2024Updated 2 years ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆36Updated this week