dbdimitrov / BingleSeq
BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
☆21Updated 3 years ago
Alternatives and similar repositories for BingleSeq:
Users that are interested in BingleSeq are comparing it to the libraries listed below
- ConsensusTME Gene Sets and R Script☆39Updated 9 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆24Updated last year
- ☆18Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated 2 weeks ago
- ☆15Updated 3 years ago
- ☆21Updated 4 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- ☆12Updated 10 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- ☆36Updated 8 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Inference of TCR motifs☆29Updated this week
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- ☆38Updated 4 years ago
- ☆29Updated last year
- A tool for large scale omics datasets evaluation☆24Updated last year
- An r package that works as a wrapper to homologene☆43Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago