haniffalab / FCA_liver
All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).
☆38Updated 4 years ago
Alternatives and similar repositories for FCA_liver:
Users that are interested in FCA_liver are comparing it to the libraries listed below
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆59Updated 5 years ago
- Functional Inference of Gene Regulation☆41Updated 8 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆33Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 10 months ago
- ☆30Updated 2 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- A pipeline for scRNA-seq data analysis☆12Updated 3 weeks ago
- scWGCNA☆58Updated 2 years ago
- simpler single cell RNAseq data clustering☆40Updated 3 weeks ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Updated 5 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆31Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- ☆53Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆62Updated 5 months ago
- ☆45Updated 5 years ago
- ☆16Updated 5 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago