haniffalab / FCA_liverLinks
All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).
☆39Updated 5 years ago
Alternatives and similar repositories for FCA_liver
Users that are interested in FCA_liver are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Functional Inference of Gene Regulation☆46Updated last year
- ☆63Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 9 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 3 months ago
- Draw phylogenetic trees of tumor evolution☆81Updated 2 years ago
- ☆50Updated 5 years ago
- ☆61Updated 6 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- simpler single cell RNAseq data clustering☆40Updated 5 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆86Updated last month
- ☆41Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆24Updated last month
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- SCDC☆45Updated last month
- scWGCNA☆61Updated 2 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆29Updated 5 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 2 years ago