waldronlab / TCGAutilsLinks
Toolbox package for organizing and working with TCGA data
☆28Updated 3 weeks ago
Alternatives and similar repositories for TCGAutils
Users that are interested in TCGAutils are comparing it to the libraries listed below
Sorting:
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 3 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated last month
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated last month
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 weeks ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆23Updated this week
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Gene-level general linear mixed model☆22Updated 6 months ago
- Evolutionary frequency visualization tool of temporal data☆22Updated 3 years ago
- An introduction to matrix factorization and PCA and SVD.☆41Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 10 months ago
- countsimQC - Compare characteristic features of count data sets☆28Updated 2 weeks ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- An R package to plot interactive three-way differential expression analysis☆38Updated last year
- This is the ensembldb development repository.☆35Updated 11 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 8 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 4 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 3 months ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 2 weeks ago
- Brings SummarizedExperiment to the tidyverse☆26Updated 3 weeks ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Open-Source Software for Omic Data Analysis and Visualization☆35Updated this week
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year