waldronlab / TCGAutils
Toolbox package for organizing and working with TCGA data
☆24Updated last month
Alternatives and similar repositories for TCGAutils:
Users that are interested in TCGAutils are comparing it to the libraries listed below
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Gene-level general linear mixed model☆19Updated last week
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Template for building a bioconductor workshop package using github actions☆19Updated 6 months ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated last year
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- Code for EpiMap data browser☆14Updated 7 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated 3 weeks ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆18Updated this week
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated last month
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 weeks ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- R package for benchmarking single cell analysis methods☆30Updated last year
- Clone of the Bioconductor repository for the basilisk package.☆27Updated 3 months ago
- Core utilities for single-cell RNA-seq☆12Updated last month
- ☆17Updated 8 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- ☆23Updated last year
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago