pachterlab / Bi-BE-CS-183-2022Links
Website for the 2021-2022 Caltech class Bi/BE/CS 183: Introduction to Computational Biology and Bioinformatics
☆10Updated 3 years ago
Alternatives and similar repositories for Bi-BE-CS-183-2022
Users that are interested in Bi-BE-CS-183-2022 are comparing it to the libraries listed below
Sorting:
- ☆27Updated 2 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆13Updated 5 years ago
- ☆12Updated 4 years ago
- ☆43Updated last year
- ☆43Updated 7 months ago
- ☆53Updated 7 months ago
- Inference of TCR motifs☆32Updated last week
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- Functional Embedding of Gene Signatures☆45Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆35Updated 2 years ago
- Code and example of the D-SPIN framework☆22Updated 2 weeks ago
- ☆13Updated this week
- ☆19Updated 11 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- ☆10Updated last year
- cTPnet Package☆25Updated 2 years ago
- ☆28Updated last month
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 3 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 3 months ago
- ☆12Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆25Updated 3 weeks ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 5 months ago
- Python package to load and query ARCHS4 data☆23Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆53Updated 5 years ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆17Updated this week
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago