haniffalab / Single-cell-RNAseq-data-analysis-bundle
☆12Updated 2 years ago
Alternatives and similar repositories for Single-cell-RNAseq-data-analysis-bundle:
Users that are interested in Single-cell-RNAseq-data-analysis-bundle are comparing it to the libraries listed below
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 7 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 9 months ago
- ☆28Updated 6 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated 2 years ago
- ☆33Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- Explore the cancer relevance of your gene list☆51Updated last month
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- RNA velocity validation☆22Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- ☆22Updated 5 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 2 weeks ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago