haniffalab / Single-cell-RNAseq-data-analysis-bundleLinks
☆12Updated 3 years ago
Alternatives and similar repositories for Single-cell-RNAseq-data-analysis-bundle
Users that are interested in Single-cell-RNAseq-data-analysis-bundle are comparing it to the libraries listed below
Sorting:
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- ☆22Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- ☆28Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- See: https://www.iscb.org/ismb2018/3511#am1☆18Updated 7 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 6 years ago
- ☆55Updated 4 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆28Updated 4 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Single cell RNA Seq data analysis with quantitative phenotypes☆13Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆12Updated 4 years ago
- Collection of useful methods for single cell analysis☆14Updated last year
- ☆21Updated 3 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago