haniffalab / Single-cell-RNAseq-data-analysis-bundle
☆12Updated 2 years ago
Alternatives and similar repositories for Single-cell-RNAseq-data-analysis-bundle:
Users that are interested in Single-cell-RNAseq-data-analysis-bundle are comparing it to the libraries listed below
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 7 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 3 years ago
- ☆28Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 7 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- A study to compare methods for clustering of scRNA-seq data☆42Updated 6 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- ☆20Updated 2 months ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆15Updated 3 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated last year
- ☆14Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 8 months ago
- ☆16Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago