xu-lab / SINCERALinks
An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis
☆28Updated 4 years ago
Alternatives and similar repositories for SINCERA
Users that are interested in SINCERA are comparing it to the libraries listed below
Sorting:
- scRNA-seq cell type identification☆43Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated 3 weeks ago
- ☆55Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- ☆43Updated 5 months ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Updated 7 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- ☆43Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- ☆28Updated 6 years ago
- scWGCNA☆61Updated 3 years ago
- ☆34Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- ☆32Updated 9 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Clone of the Bioconductor repository for the scran package.☆45Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 8 months ago