Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
☆16Dec 8, 2021Updated 4 years ago
Alternatives and similar repositories for scCustomize
Users that are interested in scCustomize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Sep 28, 2022Updated 4 years ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 5 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 6 years ago
- R/Bioconductor package for working with 10x scATACseq data☆43Nov 13, 2023Updated 2 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Harvard FAS informatics scRNAseq workshop website☆40Aug 8, 2019Updated 7 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Docker container for genomics analyses in R.☆28Apr 29, 2024Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- Single Cell Cluster Evaluation☆102Jul 28, 2021Updated 5 years ago
- ATAC-seq snakemake pipeline☆90Feb 13, 2020Updated 6 years ago
- RNAseq pipeline based on snakemake☆27Mar 8, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- my CV using pagedown☆11Mar 17, 2021Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆38Jul 5, 2021Updated 5 years ago
- Bioinformatics one-liner for 100 days☆49Apr 9, 2024Updated 2 years ago
- Model-based Analysis of Protein Degradability☆12Aug 30, 2021Updated 5 years ago
- ☆10Aug 22, 2018Updated 8 years ago
- Unify Dimensionality Reduction Results☆15Oct 13, 2026Updated 2 weeks ago
- My youtube programming scripts☆60Jan 16, 2025Updated last year
- ☆11Jun 23, 2026Updated 4 months ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- my notes for scATACseq analysis☆135Apr 24, 2024Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 7 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Know more about Shirley Liu lab at☆13Jan 27, 2026Updated 9 months ago
- ☆11May 19, 2020Updated 6 years ago
- tools and notes for spatial omics☆372Feb 26, 2025Updated last year
- Book introducing practical computing concepts to biologists☆11Nov 30, 2024Updated last year
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Oct 15, 2019Updated 7 years ago
- Standalone shiny server container for viewing CellChat object☆15Feb 18, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- DNA sequencing analysis notes from Ming Tang☆150Mar 26, 2023Updated 3 years ago
- 📺 Discover the latest machine learning / AI courses on YouTube.☆26Nov 26, 2023Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆16Aug 10, 2026Updated 2 months ago
- CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq☆11Jun 6, 2024Updated 2 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Dec 3, 2018Updated 7 years ago
- published papers with a lot of data☆76Apr 5, 2025Updated last year
- ☆29May 20, 2023Updated 3 years ago