crazyhottommy / scCustomize
Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
☆16Updated 3 years ago
Alternatives and similar repositories for scCustomize:
Users that are interested in scCustomize are comparing it to the libraries listed below
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆12Updated 5 years ago
- ☆22Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆16Updated 3 years ago
- ☆20Updated last year
- An R package to analyze single-cell V(D)J data☆24Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- ☆15Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Single-cell RNA Processing Software☆11Updated 5 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆24Updated last year
- Integrative analysis for scTCR- and scRNA-seq data☆15Updated last month
- Advanced steps of the OSCA book☆12Updated this week
- ☆45Updated 7 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆21Updated 3 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- ☆21Updated 4 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago