Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
☆16Dec 8, 2021Updated 4 years ago
Alternatives and similar repositories for scCustomize
Users that are interested in scCustomize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Sep 28, 2022Updated 3 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 5 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 4 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Single Cell Cluster Evaluation☆101Jul 28, 2021Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- ATAC-seq snakemake pipeline☆92Feb 13, 2020Updated 6 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆37Jul 5, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bioinformatics one-liner for 100 days☆49Apr 9, 2024Updated 2 years ago
- ☆15Jul 25, 2025Updated 10 months ago
- Know more about Shirley Liu lab at☆13Jan 27, 2026Updated 4 months ago
- My youtube programming scripts☆60Jan 16, 2025Updated last year
- ☆10Aug 22, 2018Updated 7 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 6 years ago
- tools and notes for spatial omics☆362Feb 26, 2025Updated last year
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- inference of transcription factor activity at the single cell level☆28May 27, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Docker container for genomics analyses in R.☆28Apr 29, 2024Updated 2 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Oct 15, 2019Updated 6 years ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 2 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Dec 3, 2018Updated 7 years ago
- Single-cell Case Control Analysis☆57Feb 26, 2026Updated 3 months ago
- 📺 Discover the latest machine learning / AI courses on YouTube.☆25Nov 26, 2023Updated 2 years ago
- my notes for scATACseq analysis☆132Apr 24, 2024Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆301May 11, 2026Updated last month
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- ☆24Jan 12, 2026Updated 4 months ago
- RNAseq pipeline based on snakemake☆27Mar 8, 2023Updated 3 years ago
- published papers with a lot of data☆75Apr 5, 2025Updated last year
- The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/☆107Apr 5, 2022Updated 4 years ago
- ☆29May 20, 2023Updated 3 years ago