krasnowlab / HLCALinks
☆62Updated 4 years ago
Alternatives and similar repositories for HLCA
Users that are interested in HLCA are comparing it to the libraries listed below
Sorting:
- scWGCNA☆61Updated 3 years ago
- ☆44Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated this week
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Updated 7 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- ☆63Updated 5 years ago
- ☆55Updated 4 years ago
- ☆41Updated 4 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Clone of the Bioconductor repository for the scran package.☆45Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Normalize CITEseq Data☆66Updated 3 weeks ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- ☆50Updated 5 years ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- scRNA-seq cell type identification☆43Updated 6 years ago