krasnowlab / HLCALinks
☆60Updated 3 years ago
Alternatives and similar repositories for HLCA
Users that are interested in HLCA are comparing it to the libraries listed below
Sorting:
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆54Updated 5 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- ☆61Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆24Updated 6 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated last month
- R package for pathway analysis in scRNA-seq data☆73Updated 9 months ago
- Pan-Cancer Single Cell Classifier☆71Updated last year
- ☆62Updated 4 years ago
- ☆55Updated 4 years ago
- scWGCNA☆60Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆56Updated 3 years ago
- ☆49Updated 5 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- simpler single cell RNAseq data clustering☆40Updated 3 months ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆29Updated 5 years ago
- R package for semi-supervised single-cell data integration☆82Updated 3 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated 2 weeks ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Mouse cell atlas☆59Updated 5 years ago
- ☆41Updated 3 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆105Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 3 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago