krasnowlab / HLCA

Related projects ⓘ

Alternatives and complementary repositories for HLCA

• elimereu / matchSCore2
  ☆53Updated 3 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 2 years ago
• Coolgenome / iTALK
  ☆58Updated 5 years ago
• cssmillie / ulcerative_colitis
  ☆59Updated 4 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆55Updated 2 years ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆36Updated 2 years ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆57Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆68Updated 2 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆69Updated 3 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆87Updated 11 months ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆66Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆62Updated 3 months ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆40Updated 2 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆89Updated 3 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆75Updated 9 months ago
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 6 months ago
• KChen-lab / METAFlux
  ☆48Updated 4 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆59Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆37Updated 2 months ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆63Updated 6 months ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆92Updated 5 months ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆72Updated 4 years ago
• rpolicastro / scProportionTest
  ☆59Updated last year
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 4 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆27Updated 3 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆100Updated last year
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆79Updated 3 months ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆77Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆43Updated 4 years ago