krasnowlab / HLCA
☆61Updated 3 years ago
Alternatives and similar repositories for HLCA:
Users that are interested in HLCA are comparing it to the libraries listed below
- ☆59Updated 5 years ago
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- ☆60Updated 4 years ago
- simpler single cell RNAseq data clustering☆40Updated last month
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated 2 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆76Updated 7 months ago
- R package for semi-supervised single-cell data integration☆80Updated last week
- ☆45Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- ☆54Updated 4 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 3 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆62Updated 2 years ago
- scWGCNA☆58Updated 2 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- ☆61Updated 9 months ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 6 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- R package for Pathway RespOnsive GENe activity inference☆101Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- ☆37Updated last week
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆78Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Pan-Cancer Single Cell Classifier☆66Updated 10 months ago
- Unified access to several second-generation deconvolution methods☆66Updated 3 weeks ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago