Alternatives and similar repositories for BMBL-analysis-notebooks

Users that are interested in BMBL-analysis-notebooks are comparing it to the libraries listed below

• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• BonevLab / Noack_et_al_NatNeuro2021
  Publication Page for the Noack et al. 2021 Nature Neuroscience paper
  ☆10Updated 3 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• p4rkerw / Muto_Wilson_NComm_2020
  Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
  ☆25Updated 2 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆24Updated 3 years ago
• JiaqiLiZju / Nvwa
  ☆36Updated 3 years ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆26Updated last year
• xiayh17 / RNAseqStat2
  ☆16Updated 2 years ago
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆14Updated 2 months ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• YutingPKU / Bulk_RNA-Seq_Workflow_Snakemake
  STAR, cufflinks, cluster, DESeq2, GO analysis
  ☆14Updated 5 years ago
• lydiaMyr / ImmuCellAI-mouse
  ☆10Updated 5 months ago
• xushiabbvie / TDtool
  ☆13Updated last year
• guokai8 / rcellmarker
  Identify cell type based on cell markers for single cell squencing
  ☆11Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 2 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 10 months ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 7 months ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆20Updated last month
• xyang2uchicago / BioTIP
  BioTIP: Biological Tipping-Point Identification and Characterization
  ☆22Updated last month
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• emiraldi / infTRN_lassoStARS
  Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
  ☆15Updated 3 years ago
• OSCA-source / OSCA.advanced
  Advanced steps of the OSCA book
  ☆13Updated last week
• chensujun / scRNA
  ☆32Updated 4 years ago
• jshilts / shilts-et-al-2022-immunoreceptors
  Supporting data files and code for the publication by Shilts et al.
  ☆31Updated 3 years ago
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated last year
• pablo-gar / somatic_mutations_GTEx
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆16Updated 5 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago