Alternatives and similar repositories for BMBL-analysis-notebooks

Users that are interested in BMBL-analysis-notebooks are comparing it to the libraries listed below

• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆13Updated 2 years ago
• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆24Updated last year
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated last month
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last month
• lydiaMyr / ImmuCellAI-mouse
  ☆10Updated last month
• xyang2uchicago / BioTIP
  BioTIP: Biological Tipping-Point Identification and Characterization
  ☆20Updated 3 weeks ago
• JiaqiLiZju / Nvwa
  ☆34Updated 2 years ago
• swaruplabUCI / DSAD_Spatial_Miyoshi_Morabito_2024
  Code associated with the data analysis for Miyoshi & Morabito 2024
  ☆20Updated last week
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated last year
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 3 months ago
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• olapuentesantana / easier_manuscript
  ☆15Updated 3 years ago
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆14Updated 2 weeks ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 6 months ago
• ajwilk / 2020_Wilk_COVID
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Updated 3 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 6 months ago
• lanagarmire / Asgard
  ☆43Updated last year
• neurorestore / DE-analysis
  ☆39Updated 3 years ago
• beyondpie / CEMBA_wmb_snATAC
  Whole mouse brain snATAC seq analysis
  ☆26Updated 2 months ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆30Updated last year
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆22Updated 3 years ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆20Updated last year
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 5 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated 9 months ago
• cartal / HCA_Heart
  This is the official repository for the Human Cell Atlas Heart project.
  ☆29Updated 4 years ago
• guokai8 / rcellmarker
  Identify cell type based on cell markers for single cell squencing
  ☆11Updated last year
• GreenleafLab / scScalpChromatin
  ☆27Updated last year