qasimyu / scssim
a bioinformatics tool for simulating single-cell genome sequencing data
β10Updated 5 years ago
Alternatives and similar repositories for scssim:
Users that are interested in scssim are comparing it to the libraries listed below
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Dataβ11Updated 4 years ago
- β10Updated 2 years ago
- π [Tutorial] RepSeq data mining basics in Rβ10Updated 5 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.β4Updated last year
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution anβ¦β15Updated 2 months ago
- Git repo for CONIPHER tree buildingβ18Updated 4 months ago
- A fast, easy way to present complex bioinformatics pipelines to biologistsβ11Updated 6 years ago
- β18Updated 4 years ago
- Nextflow pipeline for Mutect2 somatic variant calling best practicesβ22Updated 7 months ago
- chia pet analysis softwareβ25Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.β34Updated 6 months ago
- β15Updated 3 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniquesβ27Updated 6 years ago
- β33Updated 5 years ago
- Accompanying analysis code for the FRASER manuscriptβ26Updated 4 years ago
- Single Cell Analysis Automated Workflowβ27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ42Updated 2 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelinesβ33Updated 7 years ago
- β13Updated 8 months ago
- βοΈ A lightweight immune repertoire browserβ27Updated 5 years ago
- Long read to rMATSβ31Updated last year
- hands-on for NGS/SNParray CNV call trainningβ17Updated 2 years ago
- Repository for the Anczukow-Lab splicing pipelineβ14Updated 3 months ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomesβ22Updated last week
- ChIP-seq DC and QC Pipelineβ34Updated 3 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (β¦β12Updated last year
- A phenotype-based tool for variant prioritization in WES and WGS dataβ37Updated 2 years ago
- Identification of differentially methylated genes in biomedical dataβ14Updated 5 years ago
- FRASER - Find RAre Splicing Events in RNA-seqβ40Updated this week