qasimyu / scssim
a bioinformatics tool for simulating single-cell genome sequencing data
β10Updated 5 years ago
Alternatives and similar repositories for scssim:
Users that are interested in scssim are comparing it to the libraries listed below
- π [Tutorial] RepSeq data mining basics in Rβ10Updated 6 years ago
- β10Updated 2 years ago
- Identification of differentially methylated genes in biomedical dataβ14Updated 6 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (β¦β13Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Linksβ38Updated 4 months ago
- Detecting cancer subtypes with machine learning.β10Updated 5 years ago
- β15Updated 3 years ago
- β33Updated 5 years ago
- DNA copy number detection from off-target sequence dataβ31Updated 6 years ago
- βοΈ A lightweight immune repertoire browserβ27Updated 5 years ago
- β11Updated last year
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.β25Updated 2 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing dataβ34Updated 4 months ago
- Single Cell Analysis Automated Workflowβ27Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA reβ¦β19Updated last month
- Model-based subclonal deconvolution from bulk sequencing.β33Updated 3 months ago
- Toolkit for single-cell copy number analysisβ20Updated 5 months ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"β11Updated last year
- model-based understanding of single-cell CRISPR screeningβ23Updated 3 months ago
- β7Updated 4 years ago
- Codes and Data for FFPEsig manuscriptβ16Updated last year
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancerβ18Updated this week
- A python tool to do comparative analysis of mulitple single cell datasets.β22Updated 5 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to β¦β23Updated 3 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)β14Updated 5 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.β4Updated last year
- Explore the cancer relevance of your gene listβ51Updated last month
- hands-on for NGS/SNParray CNV call trainningβ17Updated 2 years ago
- Easy Copy Number !β21Updated 3 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Dataβ11Updated 4 years ago