qasimyu / scssimLinks
a bioinformatics tool for simulating single-cell genome sequencing data
☆10Updated 5 years ago
Alternatives and similar repositories for scssim
Users that are interested in scssim are comparing it to the libraries listed below
Sorting:
- 📝 [Tutorial] RepSeq data mining basics in R☆11Updated 6 years ago
- ⚙️ A lightweight immune repertoire browser☆27Updated 5 years ago
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆22Updated last year
- Identification of differentially methylated genes in biomedical data☆15Updated 6 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Updated 7 months ago
- ☆15Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Repository for the Anczukow-Lab splicing pipeline☆16Updated 6 months ago
- Research pipeline for exploring clinically relevant genomic variants☆16Updated 2 weeks ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- ☆10Updated 3 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆13Updated last month
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated last year
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- ☆13Updated last year
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆14Updated last year
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Git repo for CONIPHER tree building☆23Updated 6 months ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Updated last year
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆37Updated last week
- Generic human DNA variant annotation pipeline☆58Updated last year