qasimyu / scssim
a bioinformatics tool for simulating single-cell genome sequencing data
β10Updated 5 years ago
Alternatives and similar repositories for scssim:
Users that are interested in scssim are comparing it to the libraries listed below
- β10Updated 2 years ago
- β15Updated 3 years ago
- π [Tutorial] RepSeq data mining basics in Rβ10Updated 5 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (β¦β13Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Linksβ37Updated 3 months ago
- Single Cell Analysis Automated Workflowβ27Updated last year
- Toolkit for single-cell copy number analysisβ19Updated 4 months ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution anβ¦β15Updated 3 months ago
- ChIP-seq DC and QC Pipelineβ34Updated 3 years ago
- β33Updated 5 years ago
- β11Updated last year
- Identification of differentially methylated genes in biomedical dataβ14Updated 6 years ago
- β25Updated 6 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancerβ18Updated last week
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)β11Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.β28Updated 5 years ago
- Repository for the Anczukow-Lab splicing pipelineβ14Updated 4 months ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA reβ¦β19Updated 2 weeks ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing dataβ36Updated this week
- Cell tree inference and genotype calling from noisy single cell dataβ9Updated 3 months ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.β4Updated last year
- β19Updated 7 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functionsβ20Updated last year
- MuSiCa - Mutational Signatures in Cancerβ23Updated last year
- functions and algorithms for single cell RNA-seq analysesβ12Updated 4 years ago
- Git repo for CONIPHER tree buildingβ19Updated 5 months ago
- DNA copy number detection from off-target sequence dataβ30Updated 6 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seqβ22Updated last year
- Single-cell copy number calling and event history reconstruction.β20Updated 2 months ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)β11Updated 6 months ago