Alternatives and similar repositories for EPIC

Users that are interested in EPIC are comparing it to the libraries listed below

• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 4 months ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated 11 months ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 4 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• theislab / enrichment_analysis_celltype
  Cell type enrichment analysis using gene signatures and cluster markers
  ☆9Updated 7 years ago
• liuhong-jia / scAnno
  ☆24Updated 2 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 6 years ago
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆15Updated 2 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 5 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated 2 months ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated last month
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆34Updated last year
• bhattacharya-a-bt / MOSTWAS
  Multi-Omic Strategies for TWAS
  ☆13Updated 2 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 3 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• rnabioco / cellar
  scRNA-Seq analysis vignettes
  ☆9Updated 3 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• SUwonglab / rss-net
  RSS-NET: Regression with Summary Statistics exploiting Network Topology
  ☆18Updated 3 weeks ago
• theislab / GWAS-scRNAseq-Integration
  A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS
  ☆12Updated 6 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 3 weeks ago
• WeersmaLabIBD / SingleCell
  ☆9Updated last year
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• cotsapaslab / jlim
  ☆10Updated 2 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• hakyimlab / phenomexcan
  PhenomeXcan: mapping the genome to the phenome through the transcriptome
  ☆11Updated 4 years ago