junjunlab / bulkPseudotimeLinks
Pseudotime Analysis for Bulk Data
β16Updated last year
Alternatives and similar repositories for bulkPseudotime
Users that are interested in bulkPseudotime are comparing it to the libraries listed below
Sorting:
- π― tigeR: Tumor Immunotherapy Gene Expression Data Analysis R packageβ33Updated 2 months ago
- Calculating Tumor microenvironment scoreβ29Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Toolsβ36Updated 4 months ago
- The source code of web server TIP, including example data.β19Updated 6 years ago
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysisβ26Updated this week
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020β32Updated 3 years ago
- β22Updated 2 years ago
- Enrichment Networks for Pathway Enrichment Analysisβ56Updated 2 years ago
- β16Updated 4 years ago
- β47Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ceβ¦β31Updated 2 years ago
- β30Updated 7 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohortsβ13Updated 2 years ago
- β10Updated 3 months ago
- β58Updated last year
- β37Updated 2 years ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includiβ¦β15Updated 3 months ago
- This repository contained single-cell RNA-seq datasets with ICB treated patientsβ11Updated 9 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.β13Updated 2 years ago
- β48Updated 5 years ago
- Hierarchical Cell Annotationβ24Updated 9 months ago
- Gene set enrichment analysis for single-cell RNAseq dataβ28Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing dataβ34Updated 2 years ago
- Implementation of MaSigPro for scRNA-Seq Dataβ14Updated last year
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".β18Updated 6 years ago
- β32Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profilesβ33Updated 4 months ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolutionβ13Updated 2 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial cβ¦β23Updated 3 years ago
- Bayesian network plot for the enrichment analysis resultsβ65Updated 10 months ago