junjunlab / bulkPseudotime

Related projects ⓘ

Alternatives and complementary repositories for bulkPseudotime

• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆28Updated 5 months ago
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆16Updated 5 years ago
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 3 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆28Updated 10 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆26Updated this week
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆22Updated 2 years ago
• lydiaMyr / ImmuCellAI
  ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…
  ☆13Updated last year
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• JinmiaoChenLab / ezSingleCell2
  ☆37Updated 10 months ago
• PaulingLiu / metaICB
  ☆22Updated last year
• OSU-BMBL / scread-protocol
  ☆16Updated 2 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆15Updated 2 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last month
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆31Updated last year
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆12Updated 10 months ago
• ventolab / HECA-Human-Endometrial-Cell-Atlas
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆20Updated 5 months ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆46Updated last month
• gabrielakinker / CCLE_heterogeneity
  ☆53Updated 10 months ago
• olapuentesantana / easier
  R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
  ☆13Updated 6 months ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆30Updated 3 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆14Updated last year
• zgyaru / anti-PD1_ESCC
  ☆15Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆26Updated 4 months ago
• miccec / yaGST
  ☆12Updated 7 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated last year
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 5 years ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆27Updated last year
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago