vladimirsouza / lrRNAseqVariantCallingLinks
Codes for the Iso-Seq variant-calling paper
☆11Updated 2 years ago
Alternatives and similar repositories for lrRNAseqVariantCalling
Users that are interested in lrRNAseqVariantCalling are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 years ago
- ☆16Updated 4 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Direct RNA publication scripts☆11Updated 7 years ago
- ☆18Updated last year
- Structural variant merging tool☆50Updated 9 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- ☆36Updated 2 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆18Updated 2 weeks ago
- ☆19Updated 10 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- ☆20Updated 7 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 9 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated 2 months ago
- ☆12Updated 2 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- ☆22Updated 2 weeks ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Long read to rMATS☆31Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- This is the Haplotypo repository☆20Updated last year