Alternatives and similar repositories for lrRNAseqVariantCalling

Users that are interested in lrRNAseqVariantCalling are comparing it to the libraries listed below

• XiDsLab / TAGET
  ☆20Updated 3 years ago
• mcfrith / dnarrange
  ☆16Updated 11 months ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆16Updated 2 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 9 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆24Updated 2 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• mortazavilab / cerberus
  ☆20Updated last year
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆34Updated 5 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 8 months ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• nanoporetech / dRNA-paper-scripts
  Direct RNA publication scripts
  ☆11Updated 8 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 10 months ago
• UCSC-nanopore-cgl / margin
  ☆33Updated 3 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated last year
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• PacificBiosciences / pbfusion
  ☆23Updated 7 months ago
• broadinstitute / gnomad-mitochondria
  ☆15Updated last year
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 3 years ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 4 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 10 years ago
• fansalon / TEspeX
  TEspeX - pipeline for Transposable Elements expression quantification
  ☆21Updated 2 years ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆20Updated last year
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• KolmogorovLab / minda
  ☆26Updated 8 months ago