Alternatives and similar repositories for lrRNAseqVariantCalling

Users that are interested in lrRNAseqVariantCalling are comparing it to the libraries listed below

• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆16Updated 2 years ago
• mcfrith / dnarrange
  ☆16Updated last year
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 11 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆34Updated 6 months ago
• mortazavilab / cerberus
  ☆20Updated last week
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆24Updated 2 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 10 months ago
• kocherlab / pipemake
  A pipeline creation tool using Snakemake
  ☆12Updated last month
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• nanoporetech / dRNA-paper-scripts
  Direct RNA publication scripts
  ☆11Updated 8 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• EliseCoopman / methylmap
  Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.
  ☆21Updated 2 weeks ago
• RacconC / gtftools
  ☆16Updated 2 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 3 years ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 4 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 10 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• gagneurlab / splicemap
  ☆23Updated 6 months ago
• xunchen85 / ERVcaller
  ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…
  ☆13Updated 2 years ago
• PacificBiosciences / pbfusion
  ☆23Updated 8 months ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆20Updated last year
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆35Updated 3 months ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆21Updated last month
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 2 weeks ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• collaborativebioinformatics / STRdust
  ☆13Updated 3 years ago