Alternatives and similar repositories for lrRNAseqVariantCalling

Users that are interested in lrRNAseqVariantCalling are comparing it to the libraries listed below

• mcfrith / dnarrange
  ☆16Updated 6 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 4 months ago
• UCSC-nanopore-cgl / margin
  ☆31Updated 2 years ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated last year
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆52Updated 10 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 5 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆21Updated 8 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 6 months ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆19Updated 8 months ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• wdecoster / surpyvor
  A python wrapper around SURVIVOR
  ☆20Updated last year
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 2 years ago
• nanoporetech / dRNA-paper-scripts
  Direct RNA publication scripts
  ☆11Updated 7 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 4 months ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆30Updated 2 months ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• PacificBiosciences / pbfusion
  ☆23Updated last month
• mortazavilab / cerberus
  ☆19Updated 11 months ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 2 weeks ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆40Updated last month
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆19Updated 4 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆36Updated last month
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆48Updated 4 months ago