stjude / RNAIndelLinks
Somatic indel discovery tool for tumor RNA-Seq data.
☆22Updated 7 months ago
Alternatives and similar repositories for RNAIndel
Users that are interested in RNAIndel are comparing it to the libraries listed below
Sorting:
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 7 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- An R package for predicting HR deficiency from mutation contexts☆29Updated 5 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 4 months ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla