scSNV Mapping tool for 10X Single Cell Data
☆26Dec 19, 2025Updated 3 months ago
Alternatives and similar repositories for scsnv
Users that are interested in scsnv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Apr 30, 2024Updated last year
- ☆12Apr 16, 2021Updated 4 years ago
- SNV calling from single cell sequencing☆118Nov 11, 2024Updated last year
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- ☆40Aug 29, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Apr 7, 2026Updated last week
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Feb 13, 2026Updated 2 months ago
- ☆16May 13, 2022Updated 3 years ago
- ☆11Aug 21, 2024Updated last year
- ☆22Apr 6, 2018Updated 8 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Nov 7, 2024Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆18Mar 7, 2024Updated 2 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆13Jul 19, 2021Updated 4 years ago
- ☆34Jun 7, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 4 months ago
- Count HLA alleles in single-cell RNA-seq data☆63Nov 5, 2021Updated 4 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Feb 27, 2023Updated 3 years ago
- ☆12Jan 29, 2025Updated last year
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 11 months ago
- ☆34Jun 12, 2019Updated 6 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆186Mar 11, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Aug 29, 2023Updated 2 years ago
- ☆17Sep 13, 2023Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Mar 25, 2024Updated 2 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated 11 months ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Jan 6, 2026Updated 3 months ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 8 months ago
- Long Long Term Memory Neural Net Cells☆10Jan 25, 2022Updated 4 years ago
- ☆19Jul 30, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Jan 13, 2026Updated 3 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- ☆13Feb 12, 2026Updated 2 months ago
- Simple and convenient API for File System access☆17Mar 22, 2026Updated 3 weeks ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated last year