YeoLab / sailorLinks
CWL+Singularity implementation of an RNA editing workflow
☆39Updated 4 years ago
Alternatives and similar repositories for sailor
Users that are interested in sailor are comparing it to the libraries listed below
Sorting:
- Galaxy RNA workbench☆40Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 8 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Gossamer bioinformatics suite☆22Updated 8 months ago
- Reference genome resource manager☆75Updated last year
- Detection of viruses from RNA-Seq on human samples☆45Updated 2 years ago
- Module for embedding igv.js in an IPython notebook☆76Updated 6 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆80Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 7 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆45Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆137Updated 3 months ago
- ☆70Updated 2 years ago
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆98Updated last month
- Python package to annotate and visualize gene fusions.☆64Updated 10 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated 2 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago