HorvathLab / NGSLinks
Next-Gen Sequencing tools from the Horvath Lab
☆43Updated 2 weeks ago
Alternatives and similar repositories for NGS
Users that are interested in NGS are comparing it to the libraries listed below
Sorting:
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- ☆34Updated 5 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Single-cell copy number calling and event history reconstruction.☆24Updated 5 months ago
- simplified cellranger for long-read data☆19Updated last month
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆38Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- ☆49Updated 10 months ago
- snakemake workflow for post-processing scATACseq data☆21Updated 4 years ago
- ☆21Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated 11 months ago
- ☆32Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 10 months ago