Programs implementing the trio-binning genome assembly method
☆21Nov 22, 2023Updated 2 years ago
Alternatives and similar repositories for trio_binning
Users that are interested in trio_binning are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆67Dec 8, 2025Updated 8 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆42May 19, 2025Updated last year
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆12Jul 11, 2026Updated last month
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 3 months ago
- Linear-time de novo Long Read Assembler☆42Mar 19, 2026Updated 4 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆23May 29, 2018Updated 8 years ago
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆78Jun 12, 2020Updated 6 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- ☆67Apr 9, 2024Updated 2 years ago
- ☆63Sep 15, 2025Updated 11 months ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 9 months ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆46Jan 26, 2022Updated 4 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 9 months ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 6 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆33Jul 9, 2024Updated 2 years ago
- k-mer based assembly evaluation☆352Jul 6, 2026Updated last month
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆67Aug 3, 2026Updated last week
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 8 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated last month
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago