esrice / trio_binning
Programs implementing the trio-binning genome assembly method
☆19Updated last year
Alternatives and similar repositories for trio_binning:
Users that are interested in trio_binning are comparing it to the libraries listed below
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆23Updated 8 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Domain based annotation of transposable elements☆19Updated last week
- FastK based version of Merqury☆24Updated 2 weeks ago
- Reference bias measuring toolkit☆18Updated 2 weeks ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- ☆36Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 5 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆20Updated 2 months ago
- SV calling for diploid assemblies☆27Updated last year
- ☆17Updated last year
- Extracting paths from assembly graphs☆23Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last week
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆20Updated 9 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆34Updated 2 years ago
- ☆30Updated 5 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆17Updated last week
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago