Programs implementing the trio-binning genome assembly method
☆21Nov 22, 2023Updated 2 years ago
Alternatives and similar repositories for trio_binning
Users that are interested in trio_binning are comparing it to the libraries listed below
Sorting:
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated last month
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated last year
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 4 months ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- ☆41May 19, 2025Updated 9 months ago
- Linear-time de novo Long Read Assembler☆41Oct 22, 2025Updated 4 months ago
- 🔎 wheeler graph recognition algorithm, visualization and generation☆21Jul 7, 2023Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆33Jul 9, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆73Feb 19, 2019Updated 7 years ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- Evaluating genome assemblies☆115Updated this week
- ☆67Apr 9, 2024Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 5 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).☆90Jan 25, 2026Updated last month
- Reference bias measuring toolkit☆20Apr 18, 2025Updated 10 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated 2 months ago
- ☆78Jun 12, 2020Updated 5 years ago
- ☆62Sep 15, 2025Updated 5 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Nov 14, 2025Updated 3 months ago
- ☆58Dec 12, 2023Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Feb 2, 2026Updated last month
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆12May 25, 2023Updated 2 years ago