Programs implementing the trio-binning genome assembly method
☆21Nov 22, 2023Updated 2 years ago
Alternatives and similar repositories for trio_binning
Users that are interested in trio_binning are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated 11 months ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 4 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Mar 28, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆42May 19, 2025Updated 11 months ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆74Feb 19, 2019Updated 7 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago
- Evaluating genome assemblies☆120Mar 3, 2026Updated 2 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A mosaic genome painting tool for plant genomes☆18Apr 29, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- De novo annotation of young retrotransposons☆47Apr 24, 2026Updated last week
- Linear-time de novo Long Read Assembler☆41Mar 19, 2026Updated last month
- ☆78Jun 12, 2020Updated 5 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- ☆67Apr 9, 2024Updated 2 years ago
- ☆62Sep 15, 2025Updated 7 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 6 months ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 5 months ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago
- SNP genotyping in polyploids☆16Aug 12, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- ☆33Jul 9, 2024Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆67Mar 20, 2026Updated last month
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated 3 weeks ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 4 months ago