Alternatives and similar repositories for 3Dmapper:

Users that are interested in 3Dmapper are comparing it to the libraries listed below

• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 2 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆15Updated last week
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆28Updated last year
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆19Updated 9 months ago
• TattaBio / OMG
  ☆31Updated 7 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆37Updated 3 years ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆19Updated 5 months ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆9Updated 2 years ago
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated 2 months ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆20Updated 2 years ago
• Orpowell / alphafold-analyser
  A tool to visualise the results of AlphaFold2 and inspect the quality of structural predictions
  ☆13Updated 7 months ago
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆14Updated 6 months ago
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆15Updated 10 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated last year
• goodarzilab / SwitchFinder
  ☆16Updated 8 months ago
• i2bc / SCAN_IDR
  ☆11Updated last year
• ELELAB / MAVISp
  the MAVISp database for annotations and predictions of variant effects at the protein level
  ☆11Updated this week
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆14Updated last year
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• Llannelongue / B4PPI
  Benchmarking Pipeline for Prediction of Protein-Protein Interactions
  ☆11Updated 3 years ago
• seqeralabs / nf-chai
  POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction
  ☆11Updated 2 months ago
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆8Updated 2 weeks ago
• corydunnlab / SequenceBouncer
  A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).
  ☆9Updated 2 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated last month
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year