vicruiser / 3Dmapper
Map genetic variants and protein positions to protein interfaces in 3D
☆13Updated last year
Alternatives and similar repositories for 3Dmapper:
Users that are interested in 3Dmapper are comparing it to the libraries listed below
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆20Updated 9 months ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- Code for LazyAF pipeline☆21Updated last year
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Fast protein domain structure embedding+search tool☆16Updated 2 weeks ago
- Protein Sequence Annotation with Language Models☆19Updated 5 months ago
- ☆31Updated 8 months ago
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆11Updated 3 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆15Updated 11 months ago
- R tool to analyse and integrate multiple -omics data☆9Updated 2 weeks ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 3 months ago
- Plot multiple sequence alignment (MSA)☆14Updated 6 months ago
- ☆22Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆23Updated last month
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆20Updated 11 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- a collection of colabs useful for molecular biology☆31Updated last year
- A package for making tree-based visualizations for embedding vectors☆9Updated 2 years ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 3 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- EARRINGS: An efficient and ingenious adapter removal design for large-scale NGS meta-analyses☆9Updated last month
- Generation and update of protein families☆13Updated 3 weeks ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 9 months ago
- DeepECtransformer☆24Updated last year
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆9Updated 2 months ago
- Evolutionary conservation estimation of residues or nucleotides☆39Updated 3 years ago
- ☆11Updated last year