Alternatives and similar repositories for satsuma2

Users that are interested in satsuma2 are comparing it to the libraries listed below

• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 3 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆55Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆42Updated 4 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆80Updated 3 weeks ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆37Updated 2 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆62Updated 5 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 9 months ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆32Updated 3 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆53Updated 3 months ago
• kakitone / finishingTool
  finshingTool
  ☆54Updated 8 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆60Updated 7 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated last year
• cboursnell / crb-blast
  Conditional Reciprocal Best Blast
  ☆41Updated 8 years ago
• hillerlab / ForwardGenomics
  Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
  ☆24Updated 2 years ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆65Updated 5 years ago
• BioinformaticsToolsmith / Red
  Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
  ☆18Updated last year
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated 2 years ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆70Updated 2 months ago
• DyogenIBENS / SCORPIOS
  SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
  ☆21Updated 11 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• kjenike / panagram
  ☆64Updated last month
• koszullab / instaGRAAL
  Large genome reassembly based on Hi-C data, continuation of GRAAL
  ☆41Updated last year