FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing
☆45Dec 21, 2021Updated 4 years ago
Alternatives and similar repositories for satsuma2
Users that are interested in satsuma2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 2 months ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- A reference-assisted assembly tool for producing draft chromosome sequences.☆42Jun 24, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Sep 19, 2024Updated last year
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆46Nov 25, 2022Updated 3 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Analyses of sex chromosome evolution in songbirds☆17Jun 15, 2019Updated 6 years ago
- ☆11Apr 20, 2018Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- ☆13Apr 7, 2023Updated 3 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆99May 15, 2026Updated 2 weeks ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- ☆25Feb 24, 2026Updated 3 months ago
- MCMCtree tutorials☆30May 27, 2024Updated 2 years ago
- Segmental duplication detection tool☆15Feb 7, 2023Updated 3 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 5 months ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated last year
- ☆189May 22, 2025Updated last year
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 10 months ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- ☆41Jun 8, 2023Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Oct 22, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- A collection of color palettes inspired by plants and pop culture.☆21Sep 3, 2025Updated 8 months ago
- TD2☆40May 17, 2026Updated last week
- convert various features into a GFF-like file for use in genome browsers☆73Jan 27, 2026Updated 4 months ago
- An easy way to run BioNano genomic analysis☆27Apr 9, 2021Updated 5 years ago