grailbio / bio
Bioinformatic infrastructure libraries
☆78Updated 4 years ago
Alternatives and similar repositories for bio:
Users that are interested in bio are comparing it to the libraries listed below
- A lightweight and high-performance bioinformatics package in Golang☆92Updated 4 months ago
- Go / Golang Bioinformatics Library☆45Updated 3 months ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 3 years ago
- biogo high throughput sequencing repository☆125Updated 10 months ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆219Updated 4 months ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- SQL-like query language for the SAM/BAM file format☆26Updated last year
- A collection of genomics software tools written in Go (golang).☆83Updated this week
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆92Updated 2 months ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆32Updated 3 weeks ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 11 months ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Substring index for paths in a graph☆59Updated this week
- ☆82Updated 6 years ago
- A better, faster way to count guides in CRISPR screens.☆31Updated last month
- Golang for Bioinformatics☆31Updated 8 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆42Updated 5 years ago
- Query language for filtering SAM/BAM reads☆31Updated 3 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- Genome inference from a population reference graph☆94Updated 2 years ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆30Updated 4 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year
- Real time data analysis tools for the minION sequencing platform.☆30Updated 2 years ago