grailbio / bio
Bioinformatic infrastructure libraries
☆77Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for bio
- biogo high throughput sequencing repository☆125Updated 7 months ago
- A lightweight and high-performance bioinformatics package in Golang☆92Updated 2 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆216Updated last month
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 3 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- A collection of genomics software tools written in Go (golang).☆81Updated this week
- a pileup library that embraces the huge☆42Updated 4 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- Go / Golang Bioinformatics Library☆40Updated last month
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Standalone C library for assembling Illumina short reads in small regions☆72Updated last year
- ☆81Updated 5 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆92Updated 2 weeks ago
- SQL-like query language for the SAM/BAM file format☆26Updated last year
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- Population-scale genotyping using pangenome graphs☆170Updated 8 months ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated 4 months ago
- Transcript versions for HGVS libraries☆29Updated last month
- Retrieve data in genomic intervals with a Python interface for tabix.☆83Updated 7 years ago
- Graph realignment tools for structural variants☆153Updated last year
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆59Updated 4 months ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆26Updated 6 months ago
- Assembly Based ReAligner☆72Updated 6 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year