grailbio / bioLinks
Bioinformatic infrastructure libraries
☆78Updated 5 years ago
Alternatives and similar repositories for bio
Users that are interested in bio are comparing it to the libraries listed below
Sorting:
- A lightweight and high-performance bioinformatics package in Golang☆95Updated 3 weeks ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- Go / Golang Bioinformatics Library☆45Updated last year
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- Golang for Bioinformatics☆31Updated 9 years ago
- Query language for filtering SAM/BAM reads☆31Updated last year
- a pileup library that embraces the huge☆43Updated 5 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated 2 years ago
- biogo high throughput sequencing repository☆132Updated 2 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 8 months ago
- A collection of genomics software tools written in Go (golang).☆86Updated last week
- A better, faster way to count guides in CRISPR screens.☆34Updated 7 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆224Updated 2 months ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 5 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- SQL-like query language for the SAM/BAM file format☆29Updated 2 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆71Updated last month
- A Snakefile to parallelize bwa.☆13Updated 12 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆101Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- C++ package for analysing CRISPR off targets☆21Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Updated 8 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆30Updated last month
- Numerical Encoding for Human Genetic Variants☆42Updated 2 years ago