grailbio / bioLinks
Bioinformatic infrastructure libraries
☆79Updated 5 years ago
Alternatives and similar repositories for bio
Users that are interested in bio are comparing it to the libraries listed below
Sorting:
- A lightweight and high-performance bioinformatics package in Golang☆95Updated 2 weeks ago
- Go / Golang Bioinformatics Library☆45Updated 10 months ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- biogo high throughput sequencing repository☆128Updated this week
- A collection of genomics software tools written in Go (golang).☆86Updated last week
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆222Updated 11 months ago
- Golang for Bioinformatics☆31Updated 9 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 6 months ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆65Updated 5 months ago
- Query language for filtering SAM/BAM reads☆31Updated 10 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆99Updated 2 years ago
- ☆82Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆30Updated 2 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆87Updated 10 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- Interval data structure☆235Updated 8 months ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆72Updated last year
- ☆37Updated 4 months ago
- Histosketching Using Little Kmers☆57Updated 2 years ago