Bioinformatic infrastructure libraries
☆78Aug 18, 2020Updated 5 years ago
Alternatives and similar repositories for bio
Users that are interested in bio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 5 years ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 3 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- Rust wrapper for STAR aligner☆20Apr 6, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- biogo high throughput sequencing repository☆133Aug 28, 2025Updated 7 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- A lightweight and high-performance bioinformatics package in Golang☆95Oct 30, 2025Updated 5 months ago
- biogo is a bioinformatics library for Go☆403Mar 28, 2024Updated 2 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.☆292Jun 2, 2023Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 5 months ago
- ☆10Feb 23, 2024Updated 2 years ago
- A fast lossless FASTQ compressor with ultra-high compression ratio☆148May 28, 2025Updated 10 months ago
- use the noise☆15Apr 15, 2020Updated 5 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.☆14Aug 17, 2018Updated 7 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 7 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 6 months ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 4 months ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆86Mar 7, 2024Updated 2 years ago
- A multiscale pangenome browser☆29Updated this week
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- genes and genomes at your fingertips☆410Mar 5, 2026Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- workflow and resource management system for bioinformatics data analysis☆70Oct 29, 2020Updated 5 years ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago