OpenGene / repaqLinks
A fast lossless FASTQ compressor with ultra-high compression ratio
☆142Updated 5 months ago
Alternatives and similar repositories for repaq
Users that are interested in repaq are comparing it to the libraries listed below
Sorting:
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- VarDict☆199Updated last year
- ABRA2☆93Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆125Updated 2 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Short-read and long-read sequencing tools for diagnostics☆168Updated last week
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- A structural variation pipeline for short-read sequencing☆194Updated this week
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last month
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- ☆123Updated 3 months ago
- Copy number calling and variant classification using targeted short read sequencing☆140Updated 2 months ago
- WisecondorX — An evolved WISECONDOR☆105Updated 2 months ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Structural variation and indel detection by local assembly☆248Updated last month
- BAM Statistics, Feature Counting and Annotation☆150Updated last week
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated last month
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆199Updated 2 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated last month
- Annotation and Ranking of Structural Variation☆263Updated 3 weeks ago
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 10 months ago
- The nimble & robust variant annotator☆185Updated last year
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆235Updated 4 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago