Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
☆40Jun 6, 2023Updated 3 years ago
Alternatives and similar repositories for calib
Users that are interested in calib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated 2 years ago
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 7 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Nov 19, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆53Feb 7, 2018Updated 8 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Mar 20, 2026Updated 4 months ago
- Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…☆88Apr 1, 2024Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 5 years ago
- AmpliCI, a model-based algorithm for denoising Illumina amplicon data.☆25Nov 28, 2025Updated 7 months ago
- Tools for processing UMI RNA-tag data☆132Apr 30, 2026Updated 2 months ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- A collection of command line tools for working with sequencing data☆52Jul 15, 2026Updated last week
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated this week
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- All pairs search and sequence clustering☆101Jun 14, 2022Updated 4 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49May 7, 2019Updated 7 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Jun 19, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆321Jan 15, 2026Updated 6 months ago
- analysis pipeline for CODEC data☆13Apr 22, 2026Updated 3 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆30Feb 6, 2025Updated last year
- SIMD partial order alignment tool/library☆182Sep 21, 2025Updated 10 months ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 8 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆549Jun 18, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆46Nov 18, 2019Updated 6 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 11 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Apr 7, 2022Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated last month
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago