vpc-ccg / calibLinks
Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
☆39Updated 2 years ago
Alternatives and similar repositories for calib
Users that are interested in calib are comparing it to the libraries listed below
Sorting:
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 5 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆16Updated last week
- ☆21Updated 3 weeks ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Splice junction analysis and filtering from BAM files☆41Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- Gene Fusion Visualiser☆51Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 11 months ago