vpc-ccg / calibLinks
Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
☆38Updated last year
Alternatives and similar repositories for calib
Users that are interested in calib are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated 11 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last week
- Useful tools for working with Salmon output☆38Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆8Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Personal diploid genome creation and coordinate conversion☆26Updated 2 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Long read to rMATS☆31Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago