brentp / genoiserLinks
use the noise
☆15Updated 5 years ago
Alternatives and similar repositories for genoiser
Users that are interested in genoiser are comparing it to the libraries listed below
Sorting:
- useful command-line tools written to showcase hts-nim☆49Updated 4 years ago
- DNA kmer operations for nim☆14Updated 3 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 5 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16Updated 5 years ago
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆18Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- ☆14Updated 4 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 3 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- horizontal pileup☆16Updated 2 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆37Updated 4 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆14Updated 2 years ago
- haplotypes genotypes and alleles example decision synthesizer☆20Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 7 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Numerical Encoding for Human Genetic Variants☆41Updated 2 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- nim wrapper for htslib for parsing genomics data files☆156Updated 10 months ago
- Detect novel (and reference) STR expansions from short-read data☆67Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- What's The Function of these genes?☆22Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Stupid Simple (ba)Sh Testing - A functional software testing framwork☆23Updated last year